CF835451

Overview
NameCF835451
Unique NameCF835451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10948 contig Csv1_Contig10948:613..1390. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.033e-31
Identity = 75/183 (40.98%), Postives = 106/183 (57.92%), Query Frame = -1
Query:  230 PLKYFGLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXVISTSPSKKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 778
            PLK+FGL                               VIS+S  K+ EA++ LGAD++L S D   +  A  +LD IIDTV   HP+ P L LLK  GKL+L+G  ++PL      +++GRK ++GS  G M ET+E+++F     +T+ IEV+ MDYVN A+ERL + DVRYRFV+D+A +
Sbjct:  171 PLKHFGLMSPGLRGGVLGLGGVGHMGVKVAKSMGHHVTVISSSARKRGEAMDDLGADAYLVSSDAAAMAAAGDSLDYIIDTVPVHHPLEPYLALLKLDGKLILMGVINQPLSFISPMVMLGRKAITGSFIGSMAETEEVLNFCVDKGLTSQIEVVKMDYVNQALERLERNDVRYRFVVDVAGS 353          
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.695e-31
Identity = 67/141 (47.52%), Postives = 95/141 (67.38%), Query Frame = -1
Query:  239 ISTSPSKKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDI 661
            IS+S  K+ EAL+ LGAD ++   D  ++     +LD +IDTV   H + P L LLK  GKL+L+G  + PL+     L++GRK ++GS  G MKET+EM++F  +  +++ IEV+ MDYVNTA ERL K DVRYRFV+D+
Sbjct:  210 ISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEKNDVRYRFVVDV 350          
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.340e-30
Identity = 66/144 (45.83%), Postives = 94/144 (65.28%), Query Frame = -1
Query:  230 ISTSPSKKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 661
            IS+S  K+ EA++HLGAD++L S D   +  A  +LD IIDTV   HP+ P L LLK  GK VL+G   +PL      +++GRK ++GS  G + ET E++ F     +T+ IEV+ M YVN A++RL + DVRYRFV+D+A +
Sbjct:  210 ISSSSKKRAEAMDHLGADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPLEPYLALLKLDGKHVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGLTSQIEVVKMGYVNEALDRLERNDVRYRFVVDVAGS 353          
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29
Identity = 72/142 (50.70%), Postives = 95/142 (66.90%), Query Frame = -1
Query:  236 ISTSPSKKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIA 661
            +S S +KK EALE LGA+ +  + DP       G  D I++TVSA   +   L +L+  G LV VGAP KP    V SLIMGR++++GS  GG++ETQEM+DFAA+H I   IEVI  D V+ A ER+ ++DVRYRFVIDI+
Sbjct:  207 LSRSMNKKEEALE-LGANHYFATSDPATFTALAGRFDVILNTVSANLDVDAYLSMLRIDGTLVSVGAPAKPDTYSVFSLIMGRRSIAGSLVGGIQETQEMLDFAAEHGIEPKIEVIGADQVDEAYERILRSDVRYRFVIDIS 347          
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: YAHK_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yahK OS=Escherichia coli (strain K12) GN=yahK PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = -1
Query:  242 TSPSKKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELP-VISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVID 655
            T+   K EA + LGAD  +NSR+ D++   + + D I++TV+A H +     LLK  G + LVGAP  P + P V +LIM R+ ++GS  GG+ ETQEM+DF A+H I ADIE+I  D +N A ER+ + DV+YRFVID
Sbjct:  205 TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVID 343          
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 68/144 (47.22%), Postives = 99/144 (68.75%), Query Frame = -1
Query:  230 ISTSPSKKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 661
            ISTS SK+ EA++ LGAD+F+ S D +Q++    +L+ IIDT S  HP  P L LLK  G + L+  P + +++   +L +G +++SGS TGG K+ QEMI+F A + I  DIE+I +DY+N A++RL   DVR+RFVIDI N+
Sbjct:  210 ISTSESKRKEAIDLLGADNFVVSSDENQMETLKSSLNFIIDTASGDHPFDPYLTLLKVGGVMALLSFPSE-IKVHPANLNLGGRSLSGSVTGGTKDIQEMINFCAANKIYPDIEMIKIDYINEALQRLVDRDVRFRFVIDIENS 352          
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.823e-28
Identity = 68/144 (47.22%), Postives = 96/144 (66.67%), Query Frame = -1
Query:  227 STSPSKKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 658
            STS SKK EAL  LGA++F+ S D DQ++    +LD ++DT S  H   P + LLK  G  VLVG P + +++   +L +G + ++GS TGG K TQ+M+DF A H I  +IEVI +  +N A+ER+ K D++YRFVIDI N+L
Sbjct:  212 STSISKKEEALNLLGAENFVISSDHDQMKALEKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVGFPSE-IKISPANLNLGMRMLAGSVTGGTKITQQMLDFCAAHKIYPNIEVIPIQKINEALERVVKKDIKYRFVIDIKNSL 354          
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.438e-27
Identity = 66/143 (46.15%), Postives = 96/143 (67.13%), Query Frame = -1
Query:  230 STSPSKKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANT 658
            STS SK+ EA+  LGAD+F+ S D +Q++    +L  IIDT S  H   P L LLK  G +VL+  P + +++   +L +  ++++GS TGG K+ QEMI+F A +N+  DIE+I +DYVN A++RL   DVR+RFVIDI N+
Sbjct:  211 STSESKREEAINLLGADNFVISSDENQMESLKSSLHFIIDTASGDHQFDPYLSLLKVGGVMVLLSFPSE-IKVHPENLNLAARSLAGSVTGGTKDIQEMINFCAANNVYPDIEMIKIDYVNEALQRLINRDVRFRFVIDIENS 352          
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.485e-26
Identity = 61/136 (44.85%), Postives = 89/136 (65.44%), Query Frame = -1
Query:  236 KKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIA 643
            KK E    LGA S+  + DPD  +   G  D I++TVSA   +   L LL   G LV +G P+ P+ +P  +L + R++++GS+ GG+ ETQEM++F A+H +T +IE+I  DY+N A ER+  +DVRYRFVIDI+
Sbjct:  209 KKMEDGLRLGAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGGIAETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDIS 344          
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.485e-26
Identity = 61/136 (44.85%), Postives = 89/136 (65.44%), Query Frame = -1
Query:  236 KKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIA 643
            KK E    LGA S+  + DPD  +   G  D I++TVSA   +   L LL   G LV +G P+ P+ +P  +L + R++++GS+ GG+ ETQEM++F A+H +T +IE+I  DY+N A ER+  +DVRYRFVIDI+
Sbjct:  209 KKMEDGLRLGAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGGIAETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDIS 344          
The following BLAST results are available for this feature:
BLAST of CF835451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CADH2_ORYSJ1.033e-3140.98Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]
CADH5_ARATH6.695e-3147.52Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]
CADH_SACOF4.340e-3045.83Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
ADHA_BACSU2.154e-2950.70Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]
YAHK_ECOLI1.396e-2847.48Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
CADH1_ORYSJ1.396e-2847.22Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CADH1_ARATH1.823e-2847.22Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
CADH4_ORYSJ3.438e-2746.15Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
ADHC_MYCTU6.485e-2644.85NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO6.485e-2644.85NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835451 ID=CF835451; Name=CF835451; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTATATGAACAATGTTTTATTCCATTAACATTTATAGTTTT
TTGGCAATCACGACATAATTAGGGCGATGTAACTGGAAATTAAAAGTAAT
TTAAGCGCTAAAAGAGTGTAATGATCGAGGGAGCATTACATATAGCCAAG
TGGATCATGGAACAAAGTTGTGAATTGAAGACACCAATCTGATTCTGATT
CTGATTCTTCAAGGTTTGGTGGCGGCCAAGGTGTTTGCAATATCAATGAC
AAATCGATACCGAACATCAGCCTTGGCGAGCCGCTCCATTGCCGTATTGA
CATAATCCATCGAAATAACCTCAATGTCAGCTGTTATATTGTGTTTTGCT
GCAAAATCAATCATCTCTTGCGTCTCTTTCATTCCCCCAGTGCTGCTCCC
TGACACCGTCTTCCTCCCCATAATTAAGGAAATCACAGGTAGCTCGAGTG
GCTTGTCCGGAGCACCAACCAAAACAAGCTTGCCCTGGGACTTTAATAGA
CCGAGCAATGGCAAAATGGGGTGCACAGCGGACACCGTGTCAATAATACC
ATCCAATGTGCCCATGGCACCCTGCAATTGGTCAGGGTCACGGCTATTCA
AAAATGAATCAGCGCCAAGATGTTCAAGAGCTTCAGTCTTCTTGCTTGGA
GAGGTGCTAATTACTGTCACTTTGGCCCCAAAAGCCTTGGCAAATTTGAC
AGCGACATGACCAAGCCCGCCAAGGCCAACGATGCCTACATGCTTTCCTT
GTTCTGCTAGTCCAAAGTATTTCAATGG
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