CF835451

Overview
NameCF835451
Unique NameCF835451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10948 contig Csv1_Contig10948:613..1390. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: YJGB_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjgB OS=Escherichia coli (strain K12) GN=yjgB PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.091e-16
Identity = 50/138 (36.23%), Postives = 76/138 (55.07%), Query Frame = -1
Query:  245 STSPSKKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVI 658
            S++P+K+ E L  +GAD  +NSRDP  L+   G  D II+TV+      P    L   G    VGA   PL +P  +LI G ++VSGS+TG   E ++++ FAA+  +    E+  M  +N A++ +     RYR V+
Sbjct:  199 SSNPAKEQEVLA-MGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVL 335          
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: YL498_MIMIV (Probable zinc-type alcohol dehydrogenase-like protein L498 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L498 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.081e-12
Identity = 42/145 (28.97%), Postives = 77/145 (53.10%), Query Frame = -1
Query:  227 ISTSPSKKTEALEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 661
            I+ +  K  +++ +LGA+  + S +  Q+    G+ D I+ T+   H I+P + LLK +  +  VG    P  +  + L      +  S   G  E +EM+ F ++HNI  D+++I  D +N   ++L ++  +YR+VIDI  +L
Sbjct:  277 ITRTEWKFKDSVNNLGANESILSTNVWQMNQHKGSFDFILSTIPMAHDIVPYIELLKYKATICTVGELF-PTVINGMDLAQHPCFLQSSLIAGSDEIKEMLAFCSEHNIMPDVQIIKADKINDTRQKLLESKAKYRYVIDIRASL 420          
BLAST of CF835451 vs. ExPASy Swiss-Prot
Match: ADHA_RHIME (Alcohol dehydrogenase OS=Rhizobium meliloti GN=adhA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11
Identity = 40/137 (29.20%), Postives = 70/137 (51.09%), Query Frame = -1
Query:  239 KTEALEHLGADSFLNSRDPD---QLQGAMGTLDGIIDTVSAVHPILPLLGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDI 640
            K    E LGAD  +++R PD   ++Q   G L G + T  +   +     +L+S+G + LVG P   + LPV   ++ R TV GS  G  ++ +E ++FA +  + A      ++ +N   ER+ +  +  R V+D+
Sbjct:  202 KLALAEKLGADLVVDARAPDAVEEVQRRTGGLHGALVTAVSPKAMEQAYSMLRSKGTMALVGLPPGQICLPVFDTVLKRITVRGSIVGTRQDLEEALEFAGEGKVAAHFSWDKIENINAIFERMEEGKIDGRIVLDL 338          
The following BLAST results are available for this feature:
BLAST of CF835451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
YJGB_ECOLI2.091e-1636.23Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
YL498_MIMIV4.081e-1228.97Probable zinc-type alcohol dehydrogenase-like prot... [more]
ADHA_RHIME3.454e-1129.20Alcohol dehydrogenase OS=Rhizobium meliloti GN=adh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01E03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835451 ID=CF835451; Name=CF835451; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTATATGAACAATGTTTTATTCCATTAACATTTATAGTTTT
TTGGCAATCACGACATAATTAGGGCGATGTAACTGGAAATTAAAAGTAAT
TTAAGCGCTAAAAGAGTGTAATGATCGAGGGAGCATTACATATAGCCAAG
TGGATCATGGAACAAAGTTGTGAATTGAAGACACCAATCTGATTCTGATT
CTGATTCTTCAAGGTTTGGTGGCGGCCAAGGTGTTTGCAATATCAATGAC
AAATCGATACCGAACATCAGCCTTGGCGAGCCGCTCCATTGCCGTATTGA
CATAATCCATCGAAATAACCTCAATGTCAGCTGTTATATTGTGTTTTGCT
GCAAAATCAATCATCTCTTGCGTCTCTTTCATTCCCCCAGTGCTGCTCCC
TGACACCGTCTTCCTCCCCATAATTAAGGAAATCACAGGTAGCTCGAGTG
GCTTGTCCGGAGCACCAACCAAAACAAGCTTGCCCTGGGACTTTAATAGA
CCGAGCAATGGCAAAATGGGGTGCACAGCGGACACCGTGTCAATAATACC
ATCCAATGTGCCCATGGCACCCTGCAATTGGTCAGGGTCACGGCTATTCA
AAAATGAATCAGCGCCAAGATGTTCAAGAGCTTCAGTCTTCTTGCTTGGA
GAGGTGCTAATTACTGTCACTTTGGCCCCAAAAGCCTTGGCAAATTTGAC
AGCGACATGACCAAGCCCGCCAAGGCCAACGATGCCTACATGCTTTCCTT
GTTCTGCTAGTCCAAAGTATTTCAATGG
back to top