CF835452

Overview
NameCF835452
Unique NameCF835452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10948 contig Csv1_Contig10948:102..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.071e-68
Identity = 132/261 (50.57%), Postives = 164/261 (62.84%), Query Frame = 2
Query:    2 SPEH*HPVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSPSKKTEALEHLGADSFLNSRDPDPLQGAMGTLDGIIDTVSAVHPILPL 784
            S E  HPVKAFGWAARD++G LSPF FSRR TG++DVRLKVL+CG+CH+D   I N WGF+ +P+VPGHEI G VTE                     +C SCESC ++ E++C   I TY SI  DGT+T GGYSD MVA+E +I+R+P ++PLD+ APLLCAGIT YSPLKY+GL +                              I  S SK+ EALE LGADSFL + D + ++GA  +LDGIIDTV   HP+ PL
Sbjct:    4 SSEIEHPVKAFGWAARDTTGLLSPFKFSRRATGEKDVRLKVLFCGVCHSDHHMIHNNWGFTTYPIVPGHEIVGVVTEVGSKVEKVKVGDNVGIGCLVGSCRSCESCCDNRESHCENTIDTYGSIYFDGTMTHGGYSDTMVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKPGTKIGVVGLGGLGHVAVKMAKAFGAQVTVIDISESKRKEALEKLGADSFLLNSDQEQMKGARSSLDGIIDTVPVNHPLAPL 264          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.677e-67
Identity = 124/252 (49.21%), Postives = 160/252 (63.49%), Query Frame = 2
Query:   26 KAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSPSKKTEALEHLGADSFLNSRDPDPLQGAMGTLDGIIDTVSAVHPILP 781
            +A G AARDSSGHLSPF  SRR TGD+DV +K+L+CGICH+DL  IKNEW  S++P+VPGHEIAG VTE                     +C SCESC N  EN+CP+ + TY+S++ DGT+T+GGYS  +V +ER++V FP++MPLD  APLLCAGITVY+P+KY GL                                IS+SP KK EALE LGAD+F+ S   + ++ A  T+DG+I+TVSA  P+ P
Sbjct:   15 QAVGLAARDSSGHLSPFAISRRSTGDDDVAIKILFCGICHSDLHCIKNEWKHSIYPLVPGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVLGLGGLGHVAVKFARAFGLKVTVISSSPGKKREALERLGADAFVVSSSAEEMEAARSTMDGVINTVSANTPMAP 266          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.470e-65
Identity = 122/240 (50.83%), Postives = 152/240 (63.33%), Query Frame = 2
Query:   65 LSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSPSKKTEALEHLGADSFLNSRDPDPLQGAMGTLDGIIDTVSAVHPILPL 784
            LSPF FSRR TGD DVR KVLYCG+CH+DL  +KNEWG + +P+VPGHEI G VTE                     +C SCE+C +D EN C K + TY+  N DG+IT+GGY+D MVA++ +++R+P+++PLD+ APLLCAGIT YSPL+Y GL +                              ISTS SKK EALE LGAD FL S D D +Q A GTL GIIDTVSA+HP++PL
Sbjct:    2 LSPFKFSRRATGDNDVRFKVLYCGVCHSDLHMVKNEWGMTTYPIVPGHEIVGRVTEVGSKVEKFKVGDAVGVGCLVGSCLSCENCDDDSENNCAKQVQTYAFTNVDGSITYGGYADSMVADQHFVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDKPGTKVGVVGLGGLGHVAVKMAKAFGAHVTVISTSESKKQEALEKLGADEFLVSSDSDQMQAATGTLHGIIDTVSALHPVVPL 241          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.502e-65
Identity = 121/254 (47.64%), Postives = 158/254 (62.20%), Query Frame = 2
Query:   26 KAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLA-EQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSPSKKTEALEHLGADSFLNSRDPDPLQGAMGTLDGIIDTVSAVHPILPL 784
            +AFGWAA D SG LSPF+FSRRE G+ DV +K+L+CG+CH+DL  IKN WGFS +P++PGHEI G  T+                     +C SCESC  DLENYCPK++ TY+S ++DGT   GGYSD +V + R+++  PD +P D+ APLLCAGITVYSP+KY+G+  E                              IS S  K+ EA++ LGADSFL + D   ++ A+GT+D IIDTVSA H +LPL
Sbjct:    6 RAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPL 259          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.657e-64
Identity = 129/258 (50.00%), Postives = 161/258 (62.40%), Query Frame = 2
Query:   17 HPVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLD-AAAPLLCAGITVYSPLKYFGLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTS-PSKKTEALEHLGADSFLNSRDPDPLQGAMGTLDGIIDTVSAVHPILPL 784
            HP KAFGWAARDSSG LSPFNFSRR+ G+EDV L+VLYCGICHTDL   KN++G S++P VPGHE+ G V E                     +C SC++C ++LENYCPK ILT    + DGT T+GGYSD MV +E ++ R P+ +PLD   +  LC G + +SPLKY+GL +                              ISTS P+KK EA+++LGADSFL SRDPD ++    TLDGIIDTVSA H I+PL
Sbjct:   10 HPRKAFGWAARDSSGLLSPFNFSRRDIGEEDVALEVLYCGICHTDLHMAKNDFGNSIYPYVPGHEVIGIVAEVGSKVEKYKVGDKVGVGYFVESCRSCQNCIDNLENYCPKHILTQGDKHIDGTTTYGGYSDSMVVDEHFVTRIPEGLPLDGCGSSSLCWGYS-HSPLKYYGLDKPGLHVGVVGLGGLGHMVAKFAKTHGLKITVISTSPPTKKEEAIKNLGADSFLVSRDPDQMEAPKETLDGIIDTVSADHSIVPL 266          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.657e-64
Identity = 122/255 (47.84%), Postives = 158/255 (61.96%), Query Frame = 2
Query:   26 KAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTI-TFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLA-EQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSPSKKTEALEHLGADSFLNSRDPDPLQGAMGTLDGIIDTVSAVHPILPL 784
            KAFGWAA D SG LSPF+FSRRE G+ DV +K+L+CG+CH+DL  IKN WGFS +P++PGHEI G  T+                     +C SCESC  DLENYCPK++ TY+S ++DGT    GGYSD +V + R+++  PD +P D+ APLLCAGITVYSP+KY+G+  E                              IS S  K+ EA++ LGADSFL + D   ++ A+GT+D IIDTVSA H +LPL
Sbjct:    6 KAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPL 260          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 6.083e-64
Identity = 122/256 (47.66%), Postives = 151/256 (58.98%), Query Frame = 2
Query:   17 HPVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSPSKKTEALEHLGADSFLNSRDPDPLQGAMGTLDGIIDTVSAVHPILPL 784
            H   A GWAARD SG LSP+NFSRR   D+DV +KVLYCGICHTDL  +KN+WG +++P+VPGHEI G VT                      +C +C+SC    ENYCP M++T +  +  G  T GG+SD +V NE Y++R P  +PLD AAPLLCAG+TVYSP+   GL                                ISTSP K+ EALEHLGAD FL SRD   +  A GT+DGI++TVSA HP+ PL
Sbjct:   79 HGKAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHVVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGFFVGSCRTCDSCGKGYENYCPTMVITSNGKDYGGAATQGGFSDAIVVNEHYVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGKRREALEHLGADEFLVSRDAGQMAAAAGTMDGILNTVSAWHPVAPL 334          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 3.943e-63
Identity = 124/259 (47.88%), Postives = 151/259 (58.30%), Query Frame = 2
Query:   17 HPVKAFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTD---GTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSPSKKTEALEHLGADSFLNSRDPDPLQGAMGTLDGIIDTVSAVHPILPL 784
            H   A GWAARD SG LSP+NFSRR   D+DV +KVLYCGICHTDL  +KN+WG +++P+VPGHEI G VT                      +C  CE C N  ENYC KM+ T + ++ D   G  T GG+SD +V NE Y++R P  +PLD+AAPLLCAG+TVYSP+   GL                                ISTSP K+ EALEHLGAD FL SRD   +  A  T+DGI++TVSA HPI PL
Sbjct:   79 HGKAAVGWAARDDSGVLSPYNFSRRAQKDDDVTIKVLYCGICHTDLHIVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVASCRGCECCGNGYENYCAKMVTTCNGVDHDHGGGAATQGGFSDAIVVNEHYVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGKRQEALEHLGADEFLVSRDAGQMAAAAATMDGILNTVSAWHPIAPL 337          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.783e-63
Identity = 119/252 (47.22%), Postives = 154/252 (61.11%), Query Frame = 2
Query:   29 AFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSPSKKTEALEHLGADSFLNSRDPDPLQGAMGTLDGIIDTVSAVHPILPL 784
            A GWAARD+SGHLSPF+F+RR   ++DV +KVLYCGICHTDL  IKNEWG +++P+VPGHEI G V                       +C +C+SC    ENYCP M++T +  +  G  T GG+SD MV  + Y++R P S+P D AAPLLCAG+TVYSP+  +GL                                IS+SP+K+ EALE LGAD+FL+SRD + +  A  T+DGIIDTVSA HP++PL
Sbjct:    8 ALGWAARDASGHLSPFSFTRRVQEEDDVTIKVLYCGICHTDLHTIKNEWGNAMYPVVPGHEIVGVVAGVGAGVTRFKAGDTVGVGYFVDSCRACDSCGKGDENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKREEALERLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPL 259          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.147e-62
Identity = 120/252 (47.62%), Postives = 154/252 (61.11%), Query Frame = 2
Query:   29 AFGWAARDSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSPSKKTEALEHLGADSFLNSRDPDPLQGAMGTLDGIIDTVSAVHPILPL 784
            A GWAARD+SGHLSPF+F+RR   ++DV +KVLYCGICHTDL  IKNEWG +++P+VPGHEI G VT                      +C +C+SC    ENYCP M++T +  +  G  T GG+SD MV  + Y+VR P S+P D AAPLLCAG+TVYSP+  +GL                                IS+SP+K+ EAL  LGAD+FL+SRD + +  A  T+DGIIDTVSA HP++PL
Sbjct:    8 ALGWAARDTSGHLSPFSFTRRVQQEDDVTIKVLYCGICHTDLHIIKNEWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVDSCRACDSCGKGYENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKRGEALGRLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPL 259          
The following BLAST results are available for this feature:
BLAST of CF835452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
MTDH_APIGR1.071e-6850.57Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
CADH3_ORYSJ7.677e-6749.21Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
MTDH_PETCR2.470e-6550.83Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
CADH3_ARATH5.502e-6547.64Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
MTDH3_STYHU4.657e-6450.00Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
CADH2_ARATH4.657e-6447.84Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CAD8B_ORYSJ6.083e-6447.66Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
CAD8C_ORYSJ3.943e-6347.88Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CAD8A_ORYSJ8.783e-6347.22Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CAD8D_ORYSJ1.147e-6247.62Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835452 ID=CF835452; Name=CF835452; organism=Citrus sinensis; type=EST; length=784bp
GTCACCAGAACATTAACATCCAGTAAAGGCCTTCGGGTGGGCAGCCCGAG
ACAGCTCCGGCCATCTCTCCCCATTCAACTTCTCCAGAAGGGAAACGGGT
GATGAGGATGTGAGGCTGAAGGTATTGTATTGTGGGATCTGCCATACTGA
TCTCGCCAACATCAAGAATGAATGGGGCTTCTCTCTCTTCCCTATGGTTC
CTGGGCATGAAATTGCAGGGGAAGTGACAGAAGTTGGTAGCAAAGTAAGA
AAGGTTAAAGTGGGAGATAAAGTTGGAGTTGGATGCATGGTTGGTGCATG
CCACAGCTGCGAGAGCTGTGCCAATGACCTTGAAAATTACTGTCCGAAAA
TGATACTCACCTACAGTTCCATTAACACTGACGGAACAATCACATTCGGA
GGCTACTCTGATCACATGGTTGCCAATGAGCGCTACATTGTTCGATTCCC
TGATAGCATGCCCCTTGATGCTGCTGCTCCTCTGCTTTGCGCCGGGATTA
CCGTGTACAGTCCATTGAAATACTTTGGACTAGCAGAACAAGGAAAGCAT
GTAGGCATCGTTGGCCTTGGCGGGCTTGGTCATGTCGCTGTCAAATTTGC
CAAGGCTTTTGGGGCCAAAGTGACAGTAATTAGCACCTCTCCAAGCAAGA
AGACTGAAGCTCTTGAACATCTTGGCGCTGATTCATTTTTGAATAGCCGT
GACCCTGACCCATTGCAGGGTGCCATGGGCACATTGGATGGTATTATTGA
CACGGTGTCCGCTGTGCACCCCATTTTGCCATTG
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