CF835452

Overview
NameCF835452
Unique NameCF835452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH3_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 43/142 (30.28%), Postives = 65/142 (45.77%), Query Frame = 2
Query:  107 DVRLKVLYCGICHTDLANIKNEWGFS-LFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFG 529
            +V +++  CG+CHTDL     +W      P++PGHE  G V E                     AC  C+ C +  E  C        S++       GGY+++  A   Y+V+ PD++  + AAP+ CAG+T Y  LK  G
Sbjct:   27 EVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVD-------GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG 161          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH1_EMENI (Alcohol dehydrogenase 1 OS=Emericella nidulans GN=alcA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.591e-14
Identity = 47/146 (32.19%), Postives = 66/146 (45.21%), Query Frame = 2
Query:   98 GDEDVRLKVLYCGICHTDLANIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGL 532
            G + + +K+ Y G+CHTDL  +   W   +  P+V GHE AG V                       +C  CE C    +  C +  L  S    DGT     +  + +    +  + P  +PLDAAAP+LCAGITVY  LK  G+
Sbjct:   30 GPDQILVKIRYSGVCHTDLHAMMGHWPIPVKMPLVGGHEGAGIVVAKGELVHEFEIGDQAGIKWLNGSCGECEFCRQSDDPLCARAQL--SGYTVDGT-----FQQYALGKASHASKIPAGVPLDAAAPVLCAGITVYKGLKEAGV 168          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH5_YEAST (Alcohol dehydrogenase 5 OS=Saccharomyces cerevisiae GN=ADH5 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.383e-13
Identity = 48/158 (30.38%), Postives = 70/158 (44.30%), Query Frame = 2
Query:   50 DSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 520
            ++ G L   + +  E    ++ + V Y G+CH+DL     +W F L FP++ GHE AG V +                      C SCE C    E+ CP   L  +    DGT     + ++  A+       P ++ L   AP+LCAGITVY  LK
Sbjct:   17 ETDGKLEYKDVTVPEPKPNEILVHVKYSGVCHSDLHAWHGDWPFQLKFPLIGGHEGAGVVVKLGSNVKGWKVGDFAGIKWLNGTCMSCEYCEVGNESQCP--YLDGTGFTHDGT-----FQEYATADAVQAAHIPPNVNLAEVAPILCAGITVYKALK 167          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH5_SACPS (Alcohol dehydrogenase 5 OS=Saccharomyces pastorianus GN=ADH5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.383e-13
Identity = 48/158 (30.38%), Postives = 70/158 (44.30%), Query Frame = 2
Query:   50 DSSGHLSPFNFSRRETGDEDVRLKVLYCGICHTDLANIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 520
            ++ G L   + +  E    ++ + V Y G+CH+DL     +W F L FP++ GHE AG V +                      C SCE C    E+ CP   L  +    DGT     + ++  A+       P ++ L   AP+LCAGITVY  LK
Sbjct:   17 ETDGKLEYKDVTVPEPKPNEILVHVKYSGVCHSDLHAWHGDWPFQLKFPLIGGHEGAGVVVKLGSNVKGWKVGDFAGIKWLNGTCMSCEYCEVGNESQCP--YLDGTGFTHDGT-----FQEYATADAVQAAHIPPNVNLAEVAPILCAGITVYKALK 167          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH2_EMENI (Alcohol dehydrogenase 2 OS=Emericella nidulans GN=alcB PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.857e-12
Identity = 43/149 (28.86%), Postives = 63/149 (42.28%), Query Frame = 2
Query:   92 ETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPG----HEIAGEVTEXXXXXXXXXXXXXXXXXXXXX--ACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 520
            E GD +V + + + G+CH+D   + N W    FP  PG    HE  G+V +                       AC  C  C +  +  C             G  T G +  +++   +Y+   PD +P   AAPLLCAG+TVY+ LK
Sbjct:   32 EPGDNEVLINLTHSGVCHSDFGIMTNTWKILPFPTQPGQVGGHEGVGKVVKLGAGAEASGLKIGDRVGVKWISSACGQCPPCQDGADGLCFNQ-------KVSGYYTPGTFQQYVLGPAQYVTPIPDGLPSAEAAPLLCAGVTVYASLK 173          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH1_KLUMA (Alcohol dehydrogenase 1 OS=Kluyveromyces marxianus GN=ADH1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 44/139 (31.65%), Postives = 60/139 (43.17%), Query Frame = 2
Query:  107 DVRLKVLYCGICHTDLANIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 520
            ++ + V Y G+CHTDL   + +W      P+V GHE AG V                       +C SCE C    E  CPK  L+       G    G +  +  A+     R P ++ L   AP+LCAG+TVY  LK
Sbjct:   33 ELLINVKYSGVCHTDLHAWQGDWPLDTKLPLVGGHEGAGIVVAMGENVTGWEIGDYAGIKWLNGSCMSCEECELSNEPNCPKADLS-------GYTHDGSFQQYATADAVQAARIPKNVDLAEVAPILCAGVTVYKALK 164          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH3_KLULA (Alcohol dehydrogenase 3, mitochondrial OS=Kluyveromyces lactis GN=ADH3 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 44/139 (31.65%), Postives = 59/139 (42.45%), Query Frame = 2
Query:  107 DVRLKVLYCGICHTDLANIKNEWGF-SLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 520
            ++ + V Y G+CHTDL   K +W   +  P+V GHE AG V                       +C SCE C    E+ CP   L+       G    G +  +  A+     R P    L   AP+LCAG+TVY  LK
Sbjct:   59 EILINVKYSGVCHTDLHAWKGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWNIGDFAGIKWLNGSCMSCEYCELSNESNCPDADLS-------GYTHDGSFQQYATADAVQAARIPKGTDLAEVAPILCAGVTVYKALK 190          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH_STAEQ (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=adh PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 51/210 (24.29%), Postives = 81/210 (38.57%), Query Frame = 2
Query:   89 RETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSPSKKTEALEHLGADSFLNSRDPDPLQ 718
            RE    +  +K  YCG+CHTDL ++KN     +  +  GHE  G V E                     AC +CE C    E  C  ++         G    G  ++ ++ +  Y V+ P+++   AA+ + CAG+T Y  +K  G+                                   +  K   A E LGAD+ +NS + DP++
Sbjct:   20 RELKPGEALVKTEYCGVCHTDL-HVKNADFGDVTGVTLGHEGIGRVIEVADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVL-------NAGYTVDGAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGIEPGQWLGVFGVGGLGNLALQYAKNVMGAKVVAFDINDDKLNFAKE-LGADAIINSTNVDPIE 220          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH2_KLULA (Alcohol dehydrogenase 2 OS=Kluyveromyces lactis GN=ADH2 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 44/139 (31.65%), Postives = 59/139 (42.45%), Query Frame = 2
Query:  107 DVRLKVLYCGICHTDLANIKNEWGF-SLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 520
            ++ + V Y G+CHTDL   K +W   +  P+V GHE AG V                       +C SCE C    E+ CP   L+       G    G +  +  A+     R P    L   AP+LCAG+TVY  LK
Sbjct:   33 ELLINVKYSGVCHTDLHAWKGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWNIGDFAGIKWLNGSCMSCEYCELSNESNCPDADLS-------GYTHDGSFQQYATADAVQAARIPKGTDLAEVAPILCAGVTVYKALK 164          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH1_PICST (Alcohol dehydrogenase 1 OS=Pichia stipitis GN=ADH1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 45/139 (32.37%), Postives = 59/139 (42.45%), Query Frame = 2
Query:  107 DVRLKVLYCGICHTDLANIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 520
            ++ + V Y G+CHTDL   K +W      P+V GHE AG V                       +C +CE C +  E  C K  L+       G    G +  +  A+     R P    L  AAP+LCAGITVY  LK
Sbjct:   33 EILINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVGIGSNVTGWELGDYAGIKWLNGSCLNCEFCQHSDEPNCAKADLS-------GYTHDGSFQQYATADAVQAARLPKGTDLAQAAPILCAGITVYKALK 164          
The following BLAST results are available for this feature:
BLAST of CF835452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ADH3_BACST8.907e-1530.28Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ADH1_EMENI2.591e-1432.19Alcohol dehydrogenase 1 OS=Emericella nidulans GN=... [more]
ADH5_YEAST6.383e-1330.38Alcohol dehydrogenase 5 OS=Saccharomyces cerevisia... [more]
ADH5_SACPS6.383e-1330.38Alcohol dehydrogenase 5 OS=Saccharomyces pastorian... [more]
ADH2_EMENI1.857e-1228.86Alcohol dehydrogenase 2 OS=Emericella nidulans GN=... [more]
ADH1_KLUMA4.137e-1231.65Alcohol dehydrogenase 1 OS=Kluyveromyces marxianus... [more]
ADH3_KLULA5.403e-1231.65Alcohol dehydrogenase 3, mitochondrial OS=Kluyvero... [more]
ADH_STAEQ9.217e-1224.29Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH2_KLULA9.217e-1231.65Alcohol dehydrogenase 2 OS=Kluyveromyces lactis GN... [more]
ADH1_PICST9.217e-1232.37Alcohol dehydrogenase 1 OS=Pichia stipitis GN=ADH1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835452 ID=CF835452; Name=CF835452; organism=Citrus sinensis; type=EST; length=784bp
GTCACCAGAACATTAACATCCAGTAAAGGCCTTCGGGTGGGCAGCCCGAG
ACAGCTCCGGCCATCTCTCCCCATTCAACTTCTCCAGAAGGGAAACGGGT
GATGAGGATGTGAGGCTGAAGGTATTGTATTGTGGGATCTGCCATACTGA
TCTCGCCAACATCAAGAATGAATGGGGCTTCTCTCTCTTCCCTATGGTTC
CTGGGCATGAAATTGCAGGGGAAGTGACAGAAGTTGGTAGCAAAGTAAGA
AAGGTTAAAGTGGGAGATAAAGTTGGAGTTGGATGCATGGTTGGTGCATG
CCACAGCTGCGAGAGCTGTGCCAATGACCTTGAAAATTACTGTCCGAAAA
TGATACTCACCTACAGTTCCATTAACACTGACGGAACAATCACATTCGGA
GGCTACTCTGATCACATGGTTGCCAATGAGCGCTACATTGTTCGATTCCC
TGATAGCATGCCCCTTGATGCTGCTGCTCCTCTGCTTTGCGCCGGGATTA
CCGTGTACAGTCCATTGAAATACTTTGGACTAGCAGAACAAGGAAAGCAT
GTAGGCATCGTTGGCCTTGGCGGGCTTGGTCATGTCGCTGTCAAATTTGC
CAAGGCTTTTGGGGCCAAAGTGACAGTAATTAGCACCTCTCCAAGCAAGA
AGACTGAAGCTCTTGAACATCTTGGCGCTGATTCATTTTTGAATAGCCGT
GACCCTGACCCATTGCAGGGTGCCATGGGCACATTGGATGGTATTATTGA
CACGGTGTCCGCTGTGCACCCCATTTTGCCATTG
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