CF835452

Overview
NameCF835452
Unique NameCF835452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10948 contig Csv1_Contig10948:102..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH2_PICST (Alcohol dehydrogenase 2 OS=Pichia stipitis GN=ADH2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 44/139 (31.65%), Postives = 57/139 (41.01%), Query Frame = 2
Query:  107 DVRLKVLYCGICHTDLANIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 520
            ++ + V Y G+CHTDL   K +W      P+V GHE AG V                       +C  CE C    E+ CP   L+       G    G +  +  A+     R P    L   AP+LCAGITVY  LK
Sbjct:   33 ELLINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVALGENVTGWEIGDYAGIKWINGSCLQCEYCVTAHESNCPDADLS-------GYTHDGSFQQYATADAIQAARIPKGTDLALIAPILCAGITVYKALK 164          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH_STAES (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=adh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 50/210 (23.81%), Postives = 81/210 (38.57%), Query Frame = 2
Query:   89 RETGDEDVRLKVLYCGICHTDLANIKNEWGFSLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLKYFGLAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSPSKKTEALEHLGADSFLNSRDPDPLQ 718
            RE    +  +K  YCG+CHTDL ++KN     +  +  GHE  G V +                     AC +CE C    E  C  ++         G    G  ++ ++ +  Y V+ P+++   AA+ + CAG+T Y  +K  G+                                   +  K   A E LGAD+ +NS + DP++
Sbjct:   20 RELRPGEALVKTEYCGVCHTDL-HVKNADFGDVTGVTLGHEGIGRVIKIADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVL-------NAGYTVDGAMAEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGIEPGQWLGVFGVGGLGNLALQYAKNVMGAKVVAFDINDDKLNFAKE-LGADAIINSTNVDPIE 220          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH1_KLULA (Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN=ADH1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.682e-11
Identity = 43/139 (30.94%), Postives = 60/139 (43.17%), Query Frame = 2
Query:  107 DVRLKVLYCGICHTDLANIKNEWGF-SLFPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 520
            ++ + V Y G+CHTDL   K +W   +  P+V GHE AG V                       +C SCE C    E+ CP+  L+       G    G +  +  A+     + P    L   AP+LCAG+TVY  LK
Sbjct:   35 ELLINVKYSGVCHTDLHAWKGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWKIGDFAGIKWLNGSCMSCEYCELSNESNCPEADLS-------GYTHDGSFQQYATADAVQAAKIPVGTDLAEVAPVLCAGVTVYKALK 166          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH4_KLULA (Alcohol dehydrogenase 4, mitochondrial OS=Kluyveromyces lactis GN=ADH4 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 42/139 (30.22%), Postives = 59/139 (42.45%), Query Frame = 2
Query:  107 DVRLKVLYCGICHTDLANIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 520
            ++ + V Y G+CHTDL   K +W   +  P+V GHE AG V                       +C SCE C    E+ C +  L+       G    G +  +  A+     + P    L   AP+LCAG+TVY  LK
Sbjct:   60 EILINVKYSGVCHTDLHAWKGDWPLPVKLPLVGGHEGAGIVVAKGENVKNFEIGDYAGIKWLNGSCMSCELCEQGYESNCLQADLS-------GYTHDGSFQQYATADAVQAAQIPKGTDLAEIAPILCAGVTVYKALK 191          
BLAST of CF835452 vs. ExPASy Swiss-Prot
Match: ADH2_KLUMA (Alcohol dehydrogenase 2 OS=Kluyveromyces marxianus GN=ADH2 PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 42/139 (30.22%), Postives = 57/139 (41.01%), Query Frame = 2
Query:  107 DVRLKVLYCGICHTDLANIKNEWGFSL-FPMVPGHEIAGEVTEXXXXXXXXXXXXXXXXXXXXXACHSCESCANDLENYCPKMILTYSSINTDGTITFGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITVYSPLK 520
            ++ + V Y G+CHTDL   K +W      P+V GHE AG V                       +C +CE C    E+ CP   L+       G    G +  +  A+       P    L   AP+LCAG+TVY  LK
Sbjct:   33 ELLINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVAMGDNVKGWKIGDLAGIKWLNGSCMNCEECELSNESNCPDADLS-------GYTHDGSFQQYATADAVQAAHIPAGTDLAQVAPILCAGVTVYKALK 164          
The following BLAST results are available for this feature:
BLAST of CF835452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ADH2_PICST2.053e-1131.65Alcohol dehydrogenase 2 OS=Pichia stipitis GN=ADH2... [more]
ADH_STAES2.682e-1123.81Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
ADH1_KLULA2.682e-1130.94Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN... [more]
ADH4_KLULA5.974e-1130.22Alcohol dehydrogenase 4, mitochondrial OS=Kluyvero... [more]
ADH2_KLUMA5.974e-1130.22Alcohol dehydrogenase 2 OS=Kluyveromyces marxianus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E03_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835452 ID=CF835452; Name=CF835452; organism=Citrus sinensis; type=EST; length=784bp
GTCACCAGAACATTAACATCCAGTAAAGGCCTTCGGGTGGGCAGCCCGAG
ACAGCTCCGGCCATCTCTCCCCATTCAACTTCTCCAGAAGGGAAACGGGT
GATGAGGATGTGAGGCTGAAGGTATTGTATTGTGGGATCTGCCATACTGA
TCTCGCCAACATCAAGAATGAATGGGGCTTCTCTCTCTTCCCTATGGTTC
CTGGGCATGAAATTGCAGGGGAAGTGACAGAAGTTGGTAGCAAAGTAAGA
AAGGTTAAAGTGGGAGATAAAGTTGGAGTTGGATGCATGGTTGGTGCATG
CCACAGCTGCGAGAGCTGTGCCAATGACCTTGAAAATTACTGTCCGAAAA
TGATACTCACCTACAGTTCCATTAACACTGACGGAACAATCACATTCGGA
GGCTACTCTGATCACATGGTTGCCAATGAGCGCTACATTGTTCGATTCCC
TGATAGCATGCCCCTTGATGCTGCTGCTCCTCTGCTTTGCGCCGGGATTA
CCGTGTACAGTCCATTGAAATACTTTGGACTAGCAGAACAAGGAAAGCAT
GTAGGCATCGTTGGCCTTGGCGGGCTTGGTCATGTCGCTGTCAAATTTGC
CAAGGCTTTTGGGGCCAAAGTGACAGTAATTAGCACCTCTCCAAGCAAGA
AGACTGAAGCTCTTGAACATCTTGGCGCTGATTCATTTTTGAATAGCCGT
GACCCTGACCCATTGCAGGGTGCCATGGGCACATTGGATGGTATTATTGA
CACGGTGTCCGCTGTGCACCCCATTTTGCCATTG
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