CF835457

Overview
NameCF835457
Unique NameCF835457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:289..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.083e-35
Identity = 67/95 (70.53%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            E+ G   ESY+DFT  LP N+CRYAV+DFDFVT ENCQKSKIFFI+WSPD SR+R+KMLYA++KDRF+RELDGI  E+QATDPSEM +++I+ RA
Sbjct:   44 ERLGQPNESYDDFTECLPPNECRYAVFDFDFVTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIKARA 138          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.083e-35
Identity = 66/94 (70.21%), Postives = 83/94 (88.30%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            EK G    +YEDF ASLP ++CRYA+YDFDFVT+ENCQKSKIFFIAW PDV+++R+KM+YA+SKDRF+RELDGI  E+QATDP+EMDL+V++ R
Sbjct:   44 EKVGEPILTYEDFAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSR 137          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.083e-35
Identity = 65/95 (68.42%), Postives = 83/95 (87.37%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            ++ G   ESY+DFTA LP ++CRYAV+DFDFVT ENCQKSKIFFI+W+PD SR+R+KMLYA+SKDRF+RELDGI  E+QATDPSEM +++++ RA
Sbjct:   44 DRLGQPGESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.083e-35
Identity = 65/95 (68.42%), Postives = 83/95 (87.37%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EK G   ++YE+F A LP ++CRYA+YDFDFVT+ENCQKSKIFFIAW PD++++R+KM+YA+SKDRF+RELDGI  E+QATDP+EMDL+V R RA
Sbjct:   44 EKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRA 138          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.721e-35
Identity = 67/95 (70.53%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EK G    +Y+DF ASLP N+CRYA++D+DFVT ENCQKSKIFFIAWSPD SR+R+KM+YA+SKDRF+RELDGI  E+QATDP+E+ L+VIR RA
Sbjct:   44 EKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRA 138          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.641e-35
Identity = 65/94 (69.15%), Postives = 82/94 (87.23%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            EK G   E+Y+DFT+S+P ++CRYAVYDFDF T +NCQKSKIFFIAWSPD SR+R+KMLYA+SKDRF+RE++GI  E+QATDPSEM L++I+ R
Sbjct:   44 EKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGR 137          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.062e-35
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EK G   ESYEDFTA LP ++CRYAVYDFDF+T EN QKS+IFFIAWSPD +R+R+KM+YA+SKDRF+RELDGI  E+QATDP+EM L+V R RA
Sbjct:   44 EKLGEPTESYEDFTAGLPADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRA 138          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 7.917e-35
Identity = 63/95 (66.32%), Postives = 84/95 (88.42%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            ++ G   ++Y+DFTAS+P ++CRYAV+DFDFVT ENCQKSKIFFI+WSPD S++R+KMLYA+SKDRF+RELDGI  E+QATDPSEM +++++ RA
Sbjct:   44 DRLGQPGDTYDDFTASMPASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKARA 138          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.350e-34
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            EK G   +SY+DF ASLP +DCRY +YDFDFVT+ENCQKSKIFFIAWSPD +++R KM+YA+SKDRF+RELDGI  E+QATDP+EM L+V + R
Sbjct:   42 EKLGEPEQSYDDFAASLPADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSR 135          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.350e-34
Identity = 68/95 (71.58%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EK G   E+Y+DFT  LP N+CRYAVYDFDF T+EN QKSKIFFIAWSPD SR+R KM+YA+SKDRF+RELDGI  E+QATDPSEM L++I+ RA
Sbjct:   42 EKLGSPQENYDDFTNYLPPNECRYAVYDFDFTTAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSRA 136          
The following BLAST results are available for this feature:
BLAST of CF835457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
ADF_LILLO2.083e-3570.53Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF4_ARATH2.083e-3570.21Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF1_ORYSJ2.083e-3568.42Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF1_ARATH2.083e-3568.42Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF7_ORYSJ2.721e-3570.53Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF8_ARATH4.641e-3569.15Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF2_PETHY6.062e-3571.58Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF6_ORYSJ7.917e-3566.32Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF2_ARATH1.350e-3469.15Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF12_ARATH1.350e-3471.58Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835457 ID=CF835457; Name=CF835457; organism=Citrus sinensis; type=EST; length=591bp
GAAAAGACTGGACCGTTTGCTGAGAGCTATGAGGATTTCACTGCATCTTT
GCCGCATAATGACTGTCGTTATGCAGTTTATGACTTTGATTTTGTGACCT
CAGAGAATTGTCAGAAAAGCAAGATCTTTTTCATTGCATGGTCTCCTGAC
GTGTCCCGAATCCGAGCTAAGATGCTGTATGCAACATCAAAGGACAGGTT
CAGGAGGGAGCTGGACGGCATCCACTATGAAATTCAGGCAACTGACCCAA
GTGAGATGGATCTTGAGGTGATCAGAGACCGTGCACGCTGAGAATTCACC
GAAGGAAAAGAATTTGTTTCCTTGAGACTGCATTTGTGGTCTGAAGGCAC
AAACTGTCCTCCAATTAGTTGCCGTATTTGTGTGGCACATAGTACATATA
GCTATTGTTAAATAATCAGCACCTGAGAAGGCTGATAACGAGCTCATGGC
TGAGGCACTGCGATGCCAGAGGACACGGGCTCTCTATTGCCATGATGCTT
CTCAGGTAAAATTGGACATGGTCATGGATATTTATGCTGTTCGACTTTTC
TTAATGAAATGGGTATTCTCATTAGAAAAAAAAAAAAAAAA
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