CF835457

Overview
NameCF835457
Unique NameCF835457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:289..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF5_ARATH (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.493e-33
Identity = 65/96 (67.71%), Postives = 80/96 (83.33%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 288
            +K G   ESY D   SLP +DCRYAV+DFDFVT +NC+KSKIFFIAWSP+ S+IRAK+LYATSKD  RR L+GIHYE+QATDP+EM  ++I+DRA+
Sbjct:   48 DKVGGAGESYHDLEDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDRAK 143          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF1_MAIZE (Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.673e-33
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            ++ G   + Y DFT SLP N+CRYA+YD DF T ENCQKSKIFF +WSPD +R R+KMLYA+SKDRFRRELDGI  EIQATDPSEM L+++R R
Sbjct:   44 DRLGEPNQGYGDFTDSLPANECRYAIYDLDFTTIENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVRSR 137          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF5_ORYSJ (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica GN=ADF5 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.677e-33
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 288
            +K G   E YE+  A+LP +DCRYAV+DFDFVT +NCQKSKIFFIAWSP  SRIRAK+LYATSK   RR LDG+HYE+QATD SEM  +VIR RA+
Sbjct:   48 DKVGGPGEGYEELVAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDSSEMGYDVIRGRAQ 143          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF9_ARATH (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana GN=ADF9 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.264e-32
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 288
            +K G   ESY+D  ASLP +DCRYAV+DFD+VT +NC+ SKIFFI WSP+ SRIR KM+YATSK   RR LDG+HYE+QATDP+EM  + I+DRA+
Sbjct:   35 DKVGAAGESYDDLAASLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTEMGFDKIQDRAK 130          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF2_MAIZE (Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.803e-32
Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            ++ G   + Y DFT SLP ++CRYA+YD DF T ENCQKSKIFF +WSPD +R R+KMLYA+SKDRFRRELDGI  EIQATDPSEM L++++ R
Sbjct:   44 DRLGEPNQGYGDFTDSLPADECRYAIYDLDFTTVENCQKSKIFFFSWSPDTARTRSKMLYASSKDRFRRELDGIQCEIQATDPSEMSLDIVKSR 137          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.825e-31
Identity = 59/95 (62.11%), Postives = 80/95 (84.21%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EK G   +++ED  ASLP ++CRYA++DFDFV+SE   +S+IFF+AWSPD +R+R+KM+YA+SKDRF+RELDGI  E+QATDP+EMDL+V + RA
Sbjct:   44 EKIGEPGQTHEDLAASLPADECRYAIFDFDFVSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRA 138          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF8_ORYSJ (Putative actin-depolymerizing factor 8 OS=Oryza sativa subsp. japonica GN=ADF8 PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.806e-29
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            EKTG   ESY+DFTASLP +    AVYD DFV+ +NC+KSKIFFI+WSP +S IRAK +YA  +++FR ELDG+H+EIQATDP +MDLEV+R RA
Sbjct:   53 EKTGAPWESYDDFTASLPAD----AVYDLDFVSDDNCRKSKIFFISWSPSLSCIRAKTIYAVWRNQFRHELDGVHFEIQATDPDDMDLEVLRGRA 143          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF3_MAIZE (Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.446e-28
Identity = 56/96 (58.33%), Postives = 77/96 (80.21%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 288
            ++ G  A SY+DFT SLP NDCRYA+YDFDFVT+E+ QKS+IF+I WSP  +++++KMLYA+S  +F+  L+GI  E+QATD SE+ L+ I+DRAR
Sbjct:   44 DQVGDRATSYDDFTNSLPENDCRYAIYDFDFVTAEDVQKSRIFYILWSPSSAKVKSKMLYASSNQKFKSGLNGIQVELQATDASEISLDEIKDRAR 139          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF4_ORYSJ (Actin-depolymerizing factor 4 OS=Oryza sativa subsp. japonica GN=ADF4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.889e-28
Identity = 53/96 (55.21%), Postives = 77/96 (80.21%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 288
            +K G    SYEDFT+SLP  DCR+A+YDFDF+T+E+  KS+IF+I WSPD +++R+KMLYA+S +RF++EL+GI  E+QATD  E+ L+ ++DR +
Sbjct:   44 DKIGDRTTSYEDFTSSLPEGDCRFAIYDFDFLTAEDVPKSRIFYILWSPDNAKVRSKMLYASSNERFKKELNGIQLEVQATDAGEISLDALKDRVK 139          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF3_ORYSJ (Actin-depolymerizing factor 3 OS=Oryza sativa subsp. japonica GN=ADF3 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.004e-21
Identity = 46/104 (44.23%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSE-----------NCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRD 279
            ++ GP    +++ TASLP + CRYAVYD DF  S+              +SKIFF++WSP  + +R+KM+YA+S + F++ELDG+  ++QATDPSE+ L+V++D
Sbjct:   44 DRVGPRDAGFDELTASLPADGCRYAVYDHDFTVSDATATAAAGEGGEAPRSKIFFVSWSPAAADVRSKMVYASSNEGFKKELDGVQIDLQATDPSELTLDVLKD 147          
The following BLAST results are available for this feature:
BLAST of CF835457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
ADF5_ARATH1.493e-3367.71Actin-depolymerizing factor 5 OS=Arabidopsis thali... [more]
ADF1_MAIZE5.673e-3368.09Actin-depolymerizing factor 1 OS=Zea mays GN=ADF1 ... [more]
ADF5_ORYSJ9.677e-3368.75Actin-depolymerizing factor 5 OS=Oryza sativa subs... [more]
ADF9_ARATH1.264e-3264.58Actin-depolymerizing factor 9 OS=Arabidopsis thali... [more]
ADF2_MAIZE4.803e-3265.96Actin-depolymerizing factor 2 OS=Zea mays GN=ADF2 ... [more]
ADF3_ARATH1.825e-3162.11Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF8_ORYSJ3.806e-2965.26Putative actin-depolymerizing factor 8 OS=Oryza sa... [more]
ADF3_MAIZE1.446e-2858.33Actin-depolymerizing factor 3 OS=Zea mays GN=ADF3 ... [more]
ADF4_ORYSJ1.889e-2855.21Actin-depolymerizing factor 4 OS=Oryza sativa subs... [more]
ADF3_ORYSJ1.004e-2144.23Actin-depolymerizing factor 3 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835457 ID=CF835457; Name=CF835457; organism=Citrus sinensis; type=EST; length=591bp
GAAAAGACTGGACCGTTTGCTGAGAGCTATGAGGATTTCACTGCATCTTT
GCCGCATAATGACTGTCGTTATGCAGTTTATGACTTTGATTTTGTGACCT
CAGAGAATTGTCAGAAAAGCAAGATCTTTTTCATTGCATGGTCTCCTGAC
GTGTCCCGAATCCGAGCTAAGATGCTGTATGCAACATCAAAGGACAGGTT
CAGGAGGGAGCTGGACGGCATCCACTATGAAATTCAGGCAACTGACCCAA
GTGAGATGGATCTTGAGGTGATCAGAGACCGTGCACGCTGAGAATTCACC
GAAGGAAAAGAATTTGTTTCCTTGAGACTGCATTTGTGGTCTGAAGGCAC
AAACTGTCCTCCAATTAGTTGCCGTATTTGTGTGGCACATAGTACATATA
GCTATTGTTAAATAATCAGCACCTGAGAAGGCTGATAACGAGCTCATGGC
TGAGGCACTGCGATGCCAGAGGACACGGGCTCTCTATTGCCATGATGCTT
CTCAGGTAAAATTGGACATGGTCATGGATATTTATGCTGTTCGACTTTTC
TTAATGAAATGGGTATTCTCATTAGAAAAAAAAAAAAAAAA
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