CF835457

Overview
NameCF835457
Unique NameCF835457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:289..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.194e-20
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   10 GPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            G   +SYE+F  SLP ++CRYA+ D +FV  E     KI FIAWSP  +++R KM+Y+++KDRF+RELDGI  E  ATD +++ L+ IR R
Sbjct:   45 GEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRR 131          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.603e-19
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   22 ESYEDFTASLPHNDCRYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            +SY+ F   LP NDCRYAVYDF++ ++S   ++SK+ F  WSPD + +R+KM+YA+SKD  RR L GI  EIQ TD SE+  E + +R
Sbjct:   58 DSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLER 145          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.039e-18
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 1
Query:   19 AESYEDFTASLPHNDCRYAVYDFDFVTSEN-CQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            ++SY++F   LP NDC YA+YDF++    N  ++SKI F  WSPD + +R+KM+YA+SKD  RR L G+  +IQ TD SE+  E + +R
Sbjct:   47 SQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLER 135          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.022e-18
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   22 ESYEDFTASLPHNDCRYAVYDFDFVTSE-NCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            ++Y+ F   LP NDCRYAVYDF++   + + +++KI F  WSPD + +RAKM+YA+SKD  RR L+GI  EIQ TD SE+  E + ++
Sbjct:   48 DAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYESVLEK 135          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.022e-18
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   25 SYEDFTASLPHNDCRYAVYDFDFVTSEN-CQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            SY+ F   LP NDC YAVYDF++  SE+  ++SKI F  WSPD + +R KM+YA+SKD  +R L+G+  EIQ TD SE+  E + ++
Sbjct:   49 SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEK 135          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.155e-18
Identity = 40/86 (46.51%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   25 SYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            SY+DF A LP  +CRYA+YDF++   +  +++KI F +WSPD ++I+ KM++A+SKD  R+ L GI  EIQ TD SE+  + + D+
Sbjct:   48 SYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDK 133          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.155e-18
Identity = 41/93 (44.09%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   10 GPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 288
            GP A +YEDF + LP  DCRYA++D++F   +  Q++KI FI W+PD + I++KM+Y ++KD  +++L GI  E+QATD +E+  + + +RA+
Sbjct:   44 GPNA-TYEDFKSQLPERDCRYAIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAK 134          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.959e-17
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   25 SYEDFTASLPHNDCRYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            SY+ F   LP NDC YA+YDF++ +     ++SKI F  WSPD + +R+KM+YA+SKD  RR L+G+  ++Q TD SE+  + + +R
Sbjct:   49 SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLER 135          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.559e-17
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   22 ESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            + ++ F   LP  DCRYA+YDF+F   E   ++KI FI+WSPDV+ I++KM+Y++SKD  RR   GI  +IQATD SE+  E + ++
Sbjct:   48 KDFDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEK 133          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.559e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   22 ESYEDFTASLPHNDCRYAVYDFDFVTSEN-CQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            + Y+ F   LP NDC YAVYDF++    N  ++SKI F  WSPD + +R+KM+YA+SKD  RR L+G+  +IQ TD SE+  E + ++
Sbjct:   48 QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEK 135          
The following BLAST results are available for this feature:
BLAST of CF835457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
ADF11_ARATH7.194e-2050.55Putative actin-depolymerizing factor 11 OS=Arabido... [more]
COFI_YARLI1.603e-1951.14Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
COFI_ZYGRO1.039e-1847.19Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_PICAN3.022e-1848.86Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_CANGA3.022e-1849.43Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_USTMA5.155e-1846.51Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
ACTP_ACACA5.155e-1844.09Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_YEAST1.959e-1744.83Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_SCHPO2.559e-1747.13Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COFI_KLULA2.559e-1746.59Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835457 ID=CF835457; Name=CF835457; organism=Citrus sinensis; type=EST; length=591bp
GAAAAGACTGGACCGTTTGCTGAGAGCTATGAGGATTTCACTGCATCTTT
GCCGCATAATGACTGTCGTTATGCAGTTTATGACTTTGATTTTGTGACCT
CAGAGAATTGTCAGAAAAGCAAGATCTTTTTCATTGCATGGTCTCCTGAC
GTGTCCCGAATCCGAGCTAAGATGCTGTATGCAACATCAAAGGACAGGTT
CAGGAGGGAGCTGGACGGCATCCACTATGAAATTCAGGCAACTGACCCAA
GTGAGATGGATCTTGAGGTGATCAGAGACCGTGCACGCTGAGAATTCACC
GAAGGAAAAGAATTTGTTTCCTTGAGACTGCATTTGTGGTCTGAAGGCAC
AAACTGTCCTCCAATTAGTTGCCGTATTTGTGTGGCACATAGTACATATA
GCTATTGTTAAATAATCAGCACCTGAGAAGGCTGATAACGAGCTCATGGC
TGAGGCACTGCGATGCCAGAGGACACGGGCTCTCTATTGCCATGATGCTT
CTCAGGTAAAATTGGACATGGTCATGGATATTTATGCTGTTCGACTTTTC
TTAATGAAATGGGTATTCTCATTAGAAAAAAAAAAAAAAAA
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