CF835457

Overview
NameCF835457
Unique NameCF835457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig538 contig Csv1_Contig538:289..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.559e-17
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 1
Query:   22 ESYEDFTASLPHNDCRYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 285
            + ++ F A LP  DCR+AVYDF+F +      ++K+ FI WSPD + ++ KM++A+SK+  RR LDGIH EIQATD SE+  + + ++A
Sbjct:   47 KDFDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDALFEKA 135          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.700e-17
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   28 YEDFTASLPHNDCRYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            Y+ F   LP N+C+YA+YDF++ +     ++SKI F  WSPD + I++KM+YA+SKD  RR L+G+  ++Q TD SE+  E + DR
Sbjct:   50 YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDR 135          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.166e-16
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   28 YEDFTASLPHNDCRYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            Y+ F   LP +DC YAVYDF++ ++    ++SKI F  WSPD + IR+KM+YA+SKD  RR L+G+  +IQ TD SE+  E + ++
Sbjct:   50 YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEK 135          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 EKTGPFAESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEM 258
            + T P   S+++FT  LP N+CRY V D+ +   E  QKSKI F+AW PD + I+ KM+  +SKD  R+   GI  EIQ TD SE+
Sbjct:   41 DSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   22 ESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            + ++ F   LP  DCRYA+YD  F T E+ +K ++ F  W+P+++ +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   22 ESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            + ++ F   LP  DCRYA+YD  F T E+ +K ++ F  W+P+++ +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   22 ESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            + ++ F   LP  DCRYA+YD  F T E+ +K ++ F  W+P+++ +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.006e-13
Identity = 32/89 (35.96%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   22 ESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 288
            ES+ED+    P +DCRY VYDF ++ ++  +K+KIFFI+W P  ++I+ K+++  ++    ++L GI   I+ATD +E+   ++ +R +
Sbjct:   47 ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEERCK 135          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 31/87 (35.63%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   22 ESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            + ++ F   LP  DCRYA+YD  F T E+ +K ++ F  W+P+ + +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLNRTCIAEK 151          
BLAST of CF835457 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 31/87 (35.63%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   22 ESYEDFTASLPHNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDR 282
            + ++ F   LP  DCRYA+YD  F T E+ +K ++ F  W+P+ + +++KM+YA+SKD  +++  GI +E QA  P +++   I ++
Sbjct:   66 DPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEK 151          
The following BLAST results are available for this feature:
BLAST of CF835457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
COFI_CRYNE2.559e-1746.07Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
COFI_DEBHA5.700e-1745.35Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
COFI_ASHGO2.166e-1646.51Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]
COF1_DICDI1.075e-1546.51Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
DEST_PIG1.006e-1335.63Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN1.006e-1335.63Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_BOVIN1.006e-1335.63Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
COF4_DICDI1.006e-1335.96Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
DEST_MOUSE2.927e-1335.63Destrin OS=Mus musculus GN=Dstn PE=1 SV=3[more]
DEST_CHICK2.927e-1335.63Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835457 ID=CF835457; Name=CF835457; organism=Citrus sinensis; type=EST; length=591bp
GAAAAGACTGGACCGTTTGCTGAGAGCTATGAGGATTTCACTGCATCTTT
GCCGCATAATGACTGTCGTTATGCAGTTTATGACTTTGATTTTGTGACCT
CAGAGAATTGTCAGAAAAGCAAGATCTTTTTCATTGCATGGTCTCCTGAC
GTGTCCCGAATCCGAGCTAAGATGCTGTATGCAACATCAAAGGACAGGTT
CAGGAGGGAGCTGGACGGCATCCACTATGAAATTCAGGCAACTGACCCAA
GTGAGATGGATCTTGAGGTGATCAGAGACCGTGCACGCTGAGAATTCACC
GAAGGAAAAGAATTTGTTTCCTTGAGACTGCATTTGTGGTCTGAAGGCAC
AAACTGTCCTCCAATTAGTTGCCGTATTTGTGTGGCACATAGTACATATA
GCTATTGTTAAATAATCAGCACCTGAGAAGGCTGATAACGAGCTCATGGC
TGAGGCACTGCGATGCCAGAGGACACGGGCTCTCTATTGCCATGATGCTT
CTCAGGTAAAATTGGACATGGTCATGGATATTTATGCTGTTCGACTTTTC
TTAATGAAATGGGTATTCTCATTAGAAAAAAAAAAAAAAAA
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