CF835459

Overview
NameCF835459
Unique NameCF835459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835459 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.127e-41
Identity = 89/168 (52.98%), Postives = 108/168 (64.29%), Query Frame = 1
Query:   70 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 570
            KVFFDM +GG+P G+IV+ LF +V P+T +NF  L    +G G       Y GS FHRVI  FM Q             SIYG +F DENF  +H GPG LSMANAG  TNGSQFF+ TAKT WLDGKHVVFG+++EGMDVV+ IE     +G R  + VVIA+ G +
Sbjct:   27 KVFFDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEG-------YVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of CF835459 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.472e-41
Identity = 88/168 (52.38%), Postives = 107/168 (63.69%), Query Frame = 1
Query:   70 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 570
            KVFFD+ V G+P  RI++ LF    P+T ENF+ L  G +   K G+   YKGS+FHRVI  FM Q             SIYG +F DENF  +H G G LSMANAGP TNGSQFF+ T KT WLDGKHVVFG+VVEGM++V+ IE +   S  R  K + IA CG +
Sbjct:   33 KVFFDIEVDGKPLARIIIGLFGKTVPKTVENFKQLSIGTQL--KDGRTASYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHI 198          
BLAST of CF835459 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.472e-41
Identity = 92/169 (54.44%), Postives = 109/169 (64.50%), Query Frame = 1
Query:   70 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE--KVGSSSGRTNKPVVIADCGQL 570
            KV+FD+  G +P GRIVM L+    P+TAENFRAL TGEKG G       Y+GS+FHRVI  FM Q            +SIYG KF DENF  KH+  G+LSMANAG  TNGSQFF+ T  T WLDGKHVVFG+V+EG DVV+ IE  K G       +P+ IA  G+L
Sbjct:   36 KVYFDIEQGDKPLGRIVMGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEKIENTKTGPRDAPA-EPIKIAKSGEL 196          
BLAST of CF835459 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.284e-41
Identity = 93/187 (49.73%), Postives = 115/187 (61.50%), Query Frame = 1
Query:   28 VFFSPINQSQMPN--PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQLS 573
            +FF  I+ ++ P     V+FD+  G +  GR+ + LF    P+TAENFRAL TGEKG G       Y+GS FHRVIP FM Q            +SIYGS+F DENF   H  PG+LSMANAGP +NGSQFF+ T KT WLDG HVVFG+V+ G D+VK I K  + +   +KP   V I   GQLS
Sbjct:   12 LFFGLISANRGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFG-------YEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISK--AETDNRDKPLEDVKIIKSGQLS 189          
BLAST of CF835459 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.595e-41
Identity = 89/168 (52.98%), Postives = 106/168 (63.10%), Query Frame = 1
Query:   70 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 570
            KVFFD+ V  QP GRI++ LF    P+T ENF+ L  G     K G+   YKGS+FHRVI  FM Q             SIYG +F DENF  KH G G LSMANAGP TNG+QFF+ T +  WLDGKHVVFG+VVEGM VV+ IE + + S  R  K V IA+CG +
Sbjct:   33 KVFFDIEVDEQPLGRIIIGLFGKTVPKTVENFKQLSIGT--TLKDGRTAAYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
BLAST of CF835459 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.307e-41
Identity = 93/183 (50.82%), Postives = 114/183 (62.30%), Query Frame = 1
Query:   43 INQSQMPNPK----VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 570
            +N S+   PK    V+FD+  G +  GRIV+ L+    P TAENFRAL TGEKG G       Y+GS+FHRVI  FM Q            +SIYG+KF DENF  +HT  G+LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V+EG D+V  I+ V    GR ++P   V I   G+L
Sbjct:   22 VNASEPRGPKITNKVYFDIQHGDESLGRIVLGLYGKTVPETAENFRALATGEKGFG-------YEGSNFHRVIKDFMIQGGDFTRGDGTGGKSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNV--PKGRNDRPLKDVKIVKSGEL 195          
BLAST of CF835459 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.246e-40
Identity = 89/169 (52.66%), Postives = 105/169 (62.13%), Query Frame = 1
Query:   70 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQLS 573
            KV+FDM +GG+P GRIV+ LF    P+TA NF  L    KG G       Y GS FHRVI  FM Q             SIYG KFADENF  KH G G LSMANAG  TNGSQFF+ T KT WLDG+HVVFG+++EGMDVV+ IE+     G R  + V+IA  G ++
Sbjct:   30 KVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 191          
BLAST of CF835459 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.628e-40
Identity = 88/167 (52.69%), Postives = 108/167 (64.67%), Query Frame = 1
Query:   73 VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVV-IADCGQL 570
            V+FD+  G +P GR+V+ L+    P+TAENFRAL TGEKG G       Y+GS+FHRVI  FM Q            +SIYG KF DENF  +HT  G+LSMANAG  TNGSQFF+ T  T WLDG+HVVFG+V+EG +VV+AIE V    G   + VV I   G+L
Sbjct:   22 VYFDIEHGNKPLGRVVLGLYGKTVPKTAENFRALATGEKGFG-------YEGSTFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDENFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKIVKSGEL 181          
BLAST of CF835459 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.777e-40
Identity = 84/164 (51.22%), Postives = 100/164 (60.98%), Query Frame = 1
Query:   73 VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 564
            VFFD+  GG    +IV +L+ DV P+TA NFR L TG +G G       YKGS FHRVI  FM Q            +SIYG KFADENF  KHT P +LSMANAGP TNGSQFF+      WLDGKHVVFG+VV+G D ++  +K  S  G+    + I D G
Sbjct:    4 VFFDVQFGGDAPKKIVFKLYDDVVPKTAANFRELATGSRGFG-------YKGSVFHRVITDFMAQGGDFTNFNGTGGKSIYGEKFADENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFDTLELFKKNSSQQGKPKTTIKIVDSG 160          
BLAST of CF835459 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.800e-39
Identity = 84/171 (49.12%), Postives = 112/171 (65.50%), Query Frame = 1
Query:   67 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSK-FADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEK--VGSSSGRTNKPVVIADCGQL 570
            P VF D+ + G+  GRI + LF+ + P+TAENFR  CTGE  +G + KP+ YK S+FHR+I GFM Q             +I+ S+ F DENF  KH  PG+LSMANAG  +NG QFF+ T   ++LDGKHVVFG+V+EG D+VK IE   VG++S R    V I +CG++
Sbjct:    5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGET-LGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANS-RPKSNVAIVECGEM 173          
The following BLAST results are available for this feature:
BLAST of CF835459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
CYP6_CAEEL1.127e-4152.98Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
PPIB_SCHMA1.472e-4152.38Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_NEUCR1.472e-4154.44Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPIB_SCHPO4.284e-4149.73Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIB_SCHJA5.595e-4152.98Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_EMENI7.307e-4150.82Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
CYP5_CAEEL1.246e-4052.66Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
PPIB_ASPOR1.628e-4052.69Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIA_PARPR2.777e-4051.22Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]
PPIH_SCHPO1.800e-3949.12Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835459 ID=CF835459; Name=CF835459; organism=Citrus sinensis; type=EST; length=590bp
CCAAATCAGAAGCCCTTTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCA
ATCACAAATGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTC
AGCCGGCCGGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGA
ACCGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCGTCGGCAA
GTCCGGCAAGCCTCTCCACTACAAAGGCTCGTCCTTCCACCGTGTGATCC
CCGGATTCATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGA
GGCGAATCAATCTACGGCTCGAAATTCGCCGATGAGAACTTCGTGAAGAA
GCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCA
ACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGG
AAGCACGTTGTGTTCGGTCAGGTCGTCGAAGGGATGGACGTCGTCAAGGC
CATCGAGAAAGTGGGGTCCAGCTCCGGCAGGACCAACAAGCCCGTCGTGA
TCGCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATA
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