CF835461

Overview
NameCF835461
Unique NameCF835461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835461_ssr42 microsatellite CF835461_ssr42:42..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7909 contig Csv1_Contig7909:285..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_SYNJA (Photosystem I reaction center subunit IV OS=Synechococcus sp. (strain JA-3-3Ab) GN=psaE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:  324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEVK 491
            V++LR+ESYWY  +G+V AVD      YPV+VRF+K+NY N++TNN+  DE+E V+
Sbjct:    9 VRVLRKESYWYRDVGTVAAVDTSG-ILYPVIVRFDKINYYNINTNNFREDELEVVE 63
[Close]
BLAST of CF835461 vs. ExPASy Swiss-Prot
Match: PSAE_TRIEI (Photosystem I reaction center subunit IV OS=Trichodesmium erythraeum (strain IMS101) GN=psaE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.601e-11
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 3 
Query:  324 VKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYA-------NVSTNNYALDEIEEV 488
            V+ILR+ESYWY  +G+V +VD+    +YPV+VRF+KVNYA        V+TNN+A+DE+ E+
Sbjct:    8 VRILRKESYWYQDVGTVASVDKS-GIKYPVIVRFDKVNYAGSSGSPTGVNTNNFAIDEVVEI 68
The following BLAST results are available for this feature:
BLAST of CF835461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PSAE_SYNJA3.412e-1153.57Photosystem I reaction center subunit IV OS=Synech... [more]
PSAE_TRIEI7.601e-1151.61Photosystem I reaction center subunit IV OS=Tricho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835461 ID=CF835461; Name=CF835461; organism=Citrus sinensis; type=EST; length=581bp
ACCATTTTCTGCAACTCTCTCCCCAGTTAAACAGAAACAGCGAAAGAAAG
AAAGAAAAAGCAATGGCTAGCTGCAACATGGCATCAGCTGCTTCTGGGTT
TTCGCTGACACCCAATGTTGCCACCAATGTAAACTCAGGTTCCAAGAGCA
ACATGCTGTTTTTCCCTCCAAAGAACAACAGCTCCAACAGTTTCAGGCTT
GTTGTAAGGGCTTCTGAGGAGGCTGCTGCCCCGCCGGCTGCTGCCACCAC
CGCTGCCCCAGCTGAAGGTGAAGCAGCTCCCAAGCCCAAGCCACCTCCGA
TTGGACCCAAGAGAGGCGCCAAGGTTAAGATTCTCAGGAGGGAGTCCTAC
TGGTACAATGGCATTGGATCTGTGGTTGCTGTTGACCAGGATCCCAAGAG
TCGGTACCCAGTTGTGGTTCGATTCAACAAGGTTAACTATGCAAATGTAT
CGACGAACAACTATGCATTGGATGAGATCGAAGAAGTTAAATGAGTTATG
TAATTTTGATTTGCATATTATTCCCCGCTCTAGATTAAGCCTTTGTGTGC
CAGGAATGTGTATTCAAAAAAAAAAAAAAAA
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