CF835464

Overview
NameCF835464
Unique NameCF835464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length505
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.385e-40
Identity = 73/128 (57.03%), Postives = 95/128 (74.22%), Query Frame = -1
Query:  119 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 502
            NY + G+A+GVDL+NNPDL+ATD V+SFK+A WFWMT Q PKPSCH VI   W PS  D +AGRLPG+G+ TNIINGG+ECG      V++RIGF+  +C    +  G+NLDC+NQRP+G  L+  ++
Sbjct:  187 NYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.773e-40
Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  146 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY   G A+GVDLL+NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG+  +D V NRIGF+  +CG FGI  G NLDC NQRP+
Sbjct:  211 NYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 9.848e-40
Identity = 71/120 (59.17%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  143 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 502
            NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC    N  + NRIGF+  +C   G+ PG+NLDC+NQRP+G
Sbjct:  127 NYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.286e-39
Identity = 68/121 (56.20%), Postives = 95/121 (78.51%), Query Frame = -1
Query:  143 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGY-VGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 502
            NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG     D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  134 NYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 1.680e-39
Identity = 73/125 (58.40%), Postives = 89/125 (71.20%), Query Frame = -1
Query:  131 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 502
            NY  CG+ L + LL  P+L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECG  G N+A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:  173 NYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.680e-39
Identity = 71/121 (58.68%), Postives = 91/121 (75.21%), Query Frame = -1
Query:  146 NYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY R G+ +GV  DL+NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC    N AV +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  130 NYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.865e-39
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  146 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  GDNLDC NQRP+
Sbjct:  147 NYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.383e-39
Identity = 73/119 (61.34%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  146 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY   G ALG+DL+ NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG   NDA  +RIG++  +C   G   G NLDC NQR +
Sbjct:  141 NYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 8.337e-39
Identity = 70/119 (58.82%), Postives = 91/119 (76.47%), Query Frame = -1
Query:  146 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG+  ++ V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  201 NYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 8.337e-39
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  146 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY   G+A+G DL+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG   N  V +RIGF+  +C    + PGDNLDC +QR +
Sbjct:  126 NYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
The following BLAST results are available for this feature:
BLAST of CF835464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_VITVI3.385e-4057.03Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_ORYSJ5.773e-4061.34Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC9.848e-4059.17Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI11_ORYSJ1.286e-3956.20Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_POPTR1.680e-3958.40Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIA_SOLCI1.680e-3958.68Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIC_SECCE2.865e-3960.50Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI8_ORYSJ6.383e-3961.34Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA8.337e-3958.82Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIB_SOLLC8.337e-3960.50Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835464 ID=CF835464; Name=CF835464; organism=Citrus sinensis; type=EST; length=505bp
ATTTANTTANAATAAGAGGGTAACCCTTTAAATGTCCACCTACAAGTGTG
ACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAA
CGTTGATCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAG
GCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAATCCCAAACTTG
CCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGTCATTCCC
AACGTAGCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGT
ATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCG
TCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCA
GAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTGGCAAGTAGGT
CTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTAAGTAA
TTGCA
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