CF835464

Overview
NameCF835464
Unique NameCF835464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length505
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 159.073 bits (401), Expect = 1.089e-38
Identity = 70/119 (58.82%), Postives = 89/119 (74.79%), Query Frame = -1
Query:  146 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  199 NYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.426e-38
Identity = 70/119 (58.82%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  146 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C    +  G+NLDC NQRP+
Sbjct:  202 NYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.426e-38
Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  146 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY   G+A+G +LL+NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:  203 NYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.168e-38
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = -1
Query:  146 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  147 NYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.138e-38
Identity = 69/121 (57.02%), Postives = 88/121 (72.73%), Query Frame = -1
Query:  146 NYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY R G+ +GV  +L+NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG   N A  +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  130 NYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.058e-38
Identity = 71/119 (59.66%), Postives = 86/119 (72.27%), Query Frame = -1
Query:  146 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY + G A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG   N AV +RIG++  +CG   + PGDNLDC NQR +
Sbjct:  132 NYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 7.058e-38
Identity = 73/124 (58.87%), Postives = 86/124 (69.35%), Query Frame = -1
Query:  134 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNL 502
            NY  CG+ L + LL  P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ AGR+PGYG+ TNIINGGIECG  G N A  +RIGF+  +C   G   G NLDC  QRP+G  L
Sbjct:  210 NYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.204e-37
Identity = 69/101 (68.32%), Postives = 82/101 (81.19%), Query Frame = -1
Query:  200 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCG 502
            NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +CG
Sbjct:  201 NYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 4.575e-37
Identity = 67/120 (55.83%), Postives = 87/120 (72.50%), Query Frame = -1
Query:  143 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 502
            NY   G+A+G DLL +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG+  +D V +RIGF+  +C   G+    NLDC +QRP+G
Sbjct:  206 NYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of CF835464 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.627e-36
Identity = 69/119 (57.98%), Postives = 84/119 (70.59%), Query Frame = -1
Query:  146 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 502
            NY   G+A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG   N  V +RIG++        + PGDNLDC NQR +
Sbjct:  133 NYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
The following BLAST results are available for this feature:
BLAST of CF835464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_HORVU1.089e-3858.8226 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_SECCE2.426e-3858.82Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_ORYSJ2.426e-3856.30Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_HORVU3.168e-3859.6626 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIA_SOLLC4.138e-3857.02Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIP_TOBAC7.058e-3859.66Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI6_POPTR7.058e-3858.87Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI4_SOLTU1.204e-3768.32Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI12_ORYSJ4.575e-3755.83Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY8.627e-3657.98Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835464 ID=CF835464; Name=CF835464; organism=Citrus sinensis; type=EST; length=505bp
ATTTANTTANAATAAGAGGGTAACCCTTTAAATGTCCACCTACAAGTGTG
ACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTATTTTACTAAAA
CGTTGATCATGATGATCACATAGATTGTGCCATCAGATTAAGGCCATAAG
GCCGTTGGTTGGAGCAATCAAGATTGTCACCAGGCTGAATCCCAAACTTG
CCACAGAAAGTGGTAAAGAACCCAATACGGTTACGTACAGCGTCATTCCC
AACGTAGCCACATTCAATTCCACCGTTGATTATATTTGTGGTTAGACCGT
ATCCCGGAAGCCGGCCGGCGTTTACGTCATTTGCTGATGGTTTCCATTCG
TCGATAATGACTTCGTGGCACGATGGCTTTGGTGGCTGTGCAGTCATCCA
GAACCAGATTGCTGACTTGAATGATAGTACTGGATCAGTGGCAAGTAGGT
CTGGATTGTTCAACAAGTCCACCCCCAAGGCTTCTCCGCACCTTAAGTAA
TTGCA
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