CF835465

Overview
NameCF835465
Unique NameCF835465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:642..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.376e-37
Identity = 71/120 (59.17%), Postives = 83/120 (69.17%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP LLATDP +SFKSA WFWMT Q PKPSCH+VII  W PS +D  AGR+PG+GL TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC NQR Y       SM
Sbjct:  202 IGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.103e-37
Identity = 69/120 (57.50%), Postives = 85/120 (70.83%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP LL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR+PGYG+ TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  205 IGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.293e-37
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G DL  NP L+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  AGR+PGYG  TNIINGG+ECG+  +D V +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:  207 IGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.913e-37
Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 341
            L  +L  NP L+ATD VLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  AGRLPGYG+ TN++NGG+ECG   N  V +R+GFF  +CG  G+  G+NLDC NQRP+G
Sbjct:  132 LRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 6.913e-37
Identity = 68/111 (61.26%), Postives = 83/111 (74.77%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G DL  NP L+A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG   +  V +RIGF+  +C  FG+ PG NLDC NQR +
Sbjct:  216 IGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.481e-36
Identity = 68/120 (56.67%), Postives = 83/120 (69.17%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP LL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  AGR  GYG+ TNIINGG+ECG   N  V +RIGF+  +C   G+  G+NLDC NQ P+G  +   SM
Sbjct:  183 IGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.643e-36
Identity = 67/112 (59.82%), Postives = 82/112 (73.21%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 341
            +G +L  NP L+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D  A R+PGYG+ TNIINGGIECG   NDAV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:  140 IGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.703e-35
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLM 353
            L   L   P L+ TDP ++FK+A+WFWMT Q PKPSCH VI + W PSA D  AGR+PGYG+ TNIINGGIECG  G N+A  NRIGF+ T+C   G   G NLDC  QRP+G  L+
Sbjct:  181 LNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.703e-35
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G DL  NP L+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  D  A R+PGYG+ TNIINGG+EC    N AV +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  140 VGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.703e-35
Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G DL  NP L+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  AGR PGYG+ TNI+NGG+ECG+  +D V NRIGF+  +CG FGI  G NLDC NQRP+
Sbjct:  219 IGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
The following BLAST results are available for this feature:
BLAST of CF835465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHI1_THECC2.376e-3759.17Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_GOSHI3.103e-3757.50Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI3_ORYSJ5.293e-3760.36Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_CARPA6.913e-3759.82Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_ARATH6.913e-3761.26Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_GOSHI4.481e-3656.67Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHIQ_TOBAC7.643e-3659.82Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIB_POPTR1.703e-3558.12Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIA_SOLCI1.703e-3557.66Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI2_ORYSJ1.703e-3559.46Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835465 ID=CF835465; Name=CF835465; organism=Citrus sinensis; type=EST; length=542bp
AAGNCTTGGGGGNGGACTTGNTGAANAATCCCGTCCTACTTGCCACTGAT
CCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCC
ACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAG
CAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAAT
ATAATCAACGGTGGAATTGAATGTGGCTACGTTGGGAATGACGCTGTACG
TAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGC
CTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTTAATCTG
ATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCT
TAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGAC
AACTAAACTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACTGATCCA
ACATGGATCAATGAGTCTTCTCCATCAAAAAAAAAAAAAAAA
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