CF835465

Overview
NameCF835465
Unique NameCF835465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:642..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.905e-35
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G DL  NP L++ DPV++FK+AIWFWMT Q PKPSCH VI+ +W+PS  D  AGR+PGYG+ TNIINGG+ECG   +  V +RIGF+  +C   G+ PG NLDC NQR +
Sbjct:  201 IGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.793e-35
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 374
            +G DL   P L+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L+   + +S
Sbjct:  205 IGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.954e-35
Identity = 66/120 (55.00%), Postives = 85/120 (70.83%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 365
            +G DL  NP L+ATD V+SFK+A WFWMT Q PKPSCH VI   W PS  D +AGRLPG+G+ TNIINGG+ECG      V++RIGF+  +C    +  G+NLDC+NQRP+G  L+  ++
Sbjct:  195 IGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.471e-35
Identity = 65/111 (58.56%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G DL  NP L+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR PG+G+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  GDNLDC NQRP+
Sbjct:  155 IGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.471e-35
Identity = 68/111 (61.26%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            LG DL  NP L++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG   NDA  +RIG++  +C   G   G NLDC NQR +
Sbjct:  149 LGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.471e-35
Identity = 68/123 (55.28%), Postives = 86/123 (69.92%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM*SS 374
            +G DL   P L+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG   +  V++RIGFF  +C   G+  G+NLDC +Q P+G +L    + +S
Sbjct:  204 IGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.451e-35
Identity = 62/113 (54.87%), Postives = 86/113 (76.11%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGY-VGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 341
            LG DL  NP L+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG     D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  142 LGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.441e-34
Identity = 64/108 (59.26%), Postives = 82/108 (75.93%), Query Frame = 3
Query:   15 DLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            DL  NP LL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA D +AGR+PGYG+ TNIINGGIECG+  ++ V +R+GF+  +C  FG+ PG NLDC+NQR +
Sbjct:  212 DLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.441e-34
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 341
            +G +L  NP L+A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS  D   GR+PG+G+ TNIINGG+EC    N  + NRIGF+  +C   G+ PG+NLDC+NQRP+G
Sbjct:  135 IGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.441e-34
Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G DL  NP L+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA D +A R PGYG+ TNIINGGIECG   N  V +RIGF+  +C    + PGDNLDC +QR +
Sbjct:  134 IGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
The following BLAST results are available for this feature:
BLAST of CF835465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHI2_BRANA2.905e-3557.66Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_PHAVU3.793e-3555.28Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_VITVI4.954e-3555.00Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIC_SECCE6.471e-3558.56Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI8_ORYSJ6.471e-3561.26Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_PHAVU6.471e-3555.28Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI11_ORYSJ8.451e-3554.87Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIX_PEA1.441e-3459.26Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHID_SOLLC1.441e-3456.25Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIB_SOLLC1.441e-3459.46Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835465 ID=CF835465; Name=CF835465; organism=Citrus sinensis; type=EST; length=542bp
AAGNCTTGGGGGNGGACTTGNTGAANAATCCCGTCCTACTTGCCACTGAT
CCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCC
ACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAG
CAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAAT
ATAATCAACGGTGGAATTGAATGTGGCTACGTTGGGAATGACGCTGTACG
TAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGC
CTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTTAATCTG
ATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCT
TAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGAC
AACTAAACTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACTGATCCA
ACATGGATCAATGAGTCTTCTCCATCAAAAAAAAAAAAAAAA
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