CF835465

Overview
NameCF835465
Unique NameCF835465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:642..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.459e-34
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G +L  NP L+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  AGR+PGYG+ TNIINGG+ECG+  +  V +RIGF+  +C   G+  G NLDC NQRP+
Sbjct:  211 IGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 144.821 bits (364), Expect = 2.459e-34
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G DL  NP L+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  207 IGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.194e-34
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G +L  NP L+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  D  A R+PGYG+ TNIING  ECG   N A  +RIGF+  +CG   +  G+NLDC+NQ+ +
Sbjct:  140 VGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.194e-34
Identity = 64/111 (57.66%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G DL  NP L+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG+  +  V +RIGF+  +C   G+  G+NLDC +QRP+
Sbjct:  155 IGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.478e-34
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G DL  NP L+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  AGR+PG+G+ TNI+NGGIECG+  +  V +RIGF+  +C    +  G+NLDC NQRP+
Sbjct:  210 IGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.154e-34
Identity = 67/112 (59.82%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   18 LXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNL 350
            L   P L+ TDPV+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ AGR+PGYG+ TNIINGGIECG  G N A  +RIGF+  +C   G   G NLDC  QRP+G  L
Sbjct:  222 LLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.082e-33
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 3
Query:   15 DLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            DL  NP L+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA D +A R PG G+ TNIINGGIECG   N AV +RIG++  +CG   + PGDNLDC NQR +
Sbjct:  143 DLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 6.056e-33
Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 341
            +G DL  +P L+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA+D  AGR+PGYG+ TNIINGG+ECG+  +D V +RIGF+  +C   G+    NLDC +QRP+G
Sbjct:  214 IGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.745e-32
Identity = 63/108 (58.33%), Postives = 75/108 (69.44%), Query Frame = 3
Query:   15 DLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            DL  NP L+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA D +A R+PGYG+ TNIINGGIECG   N  V +RIG++        + PGDNLDC NQR +
Sbjct:  144 DLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.492e-31
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCG 284
            +G DL  NP L+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG   +  V++RIGF+  +CG
Sbjct:  209 IGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
The following BLAST results are available for this feature:
BLAST of CF835465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHI1_ORYSJ2.459e-3454.95Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_HORVU2.459e-3456.7626 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_SOLLC4.194e-3455.86Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI2_HORVU4.194e-3457.6626 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIA_SECCE5.478e-3456.76Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI6_POPTR7.154e-3459.82Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIP_TOBAC2.082e-3360.19Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI12_ORYSJ6.056e-3354.46Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY8.745e-3258.33Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI4_SOLTU1.492e-3164.52Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835465 ID=CF835465; Name=CF835465; organism=Citrus sinensis; type=EST; length=542bp
AAGNCTTGGGGGNGGACTTGNTGAANAATCCCGTCCTACTTGCCACTGAT
CCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCC
ACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAG
CAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAAT
ATAATCAACGGTGGAATTGAATGTGGCTACGTTGGGAATGACGCTGTACG
TAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGC
CTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTTAATCTG
ATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCT
TAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGAC
AACTAAACTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACTGATCCA
ACATGGATCAATGAGTCTTCTCCATCAAAAAAAAAAAAAAAA
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