CF835465

Overview
NameCF835465
Unique NameCF835465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:642..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.491e-28
Identity = 52/111 (46.85%), Postives = 75/111 (67.57%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            LG D   NP ++A    ++F++A+WFWMT +  KPSCH+V++ E++P   DV A R  G+GL TNI+NGG+EC   G+  V NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  180 LGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.911e-27
Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 362
            +G DL  NP L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+  ++M+ S
Sbjct:  220 IGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.802e-27
Identity = 55/120 (45.83%), Postives = 78/120 (65.00%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQS 362
            +G DL  NP L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  AGR PGYGLTTNI+ GG++C   G +   +R+ F+  +C   G+  G NLDC  Q P+   +M+ S
Sbjct:  220 IGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQC--AGGNGGADRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.486e-27
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            +G DL  NP L+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  AGR+PGYG+ TNII+GG+ECG      V +RIG++            DNLDC NQ+P+
Sbjct:  100 IGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.445e-26
Identity = 55/112 (49.11%), Postives = 69/112 (61.61%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 338
            LG +L   P  +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  D+ AGR PG+G+ TNII  G EC   G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  193 LGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGND--AVR-NRIGFFTTFCGKFGIQPGDNL 314
            +G DL  NP L+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+        G+D  AVR + IGF+  +C   G+  G +L
Sbjct:  257 IGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 39/105 (37.14%), Postives = 52/105 (49.52%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 320
            +G D   NP  +ATD   SFK+A+WFWMT                     +V++    G+G TT  ING +EC     D   +RI F+  +C  FG+ PGDNL C
Sbjct:  205 IGFDGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 36/105 (34.29%), Postives = 52/105 (49.52%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 320
            +G D   +P  +A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  205 IGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 35/105 (33.33%), Postives = 51/105 (48.57%), Query Frame = 3
Query:    6 LGXDLXXNPVLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 320
            +G D   +P  +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  202 IGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CF835465 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 3
Query:   87 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 224
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CF835465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CHI10_ORYSJ4.491e-2846.85Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ2.911e-2745.83Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI3.802e-2745.83Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIT_AVESA6.486e-2749.55Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI8_POPTR1.445e-2649.11Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
AGI_URTDI1.403e-1339.62Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIP_BETVU1.832e-1337.14Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ2.025e-1234.29Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.005e-1133.33Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ARAHY1.005e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835465 ID=CF835465; Name=CF835465; organism=Citrus sinensis; type=EST; length=542bp
AAGNCTTGGGGGNGGACTTGNTGAANAATCCCGTCCTACTTGCCACTGAT
CCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCC
ACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAG
CAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAAT
ATAATCAACGGTGGAATTGAATGTGGCTACGTTGGGAATGACGCTGTACG
TAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGC
CTGGTGACAATCTTGATTGCTCCAACCAACGGCCTTATGGCCTTAATCTG
ATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCT
TAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTTGTAGGTGGAC
AACTAAACTGTTACGCTCTTATTGTAAGTAAATTAAATAAGACTGATCCA
ACATGGATCAATGAGTCTTCTCCATCAAAAAAAAAAAAAAAA
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