CF835466

Overview
NameCF835466
Unique NameCF835466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3475 contig Csv1_Contig3475:167..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.278e-19
Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = -3
Query:  173 ELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQSE-----GFFQPLSGGNPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 613
            + LQR QRNLLGEDL PLSTKELE L+ QL++SLK +R+ +TQ  +DQL+DLQ +E++L E NK L   L +    +Q+P   L    +    ++   R+  Q +      FFQPL    PILQ+GY     ++ H      +   ++ GW+
Sbjct:  106 DALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLAD---GYQMP---LQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLE-CEPILQMGYQ---GQQDHGMEAGPSENNYMLGWL 247          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.929e-18
Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = -3
Query:  245 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWE---ASSPRQNIPSNRYPFQSEGFFQP-LSGGNPILQIGYN 616
            VE LQ  QRN+LGEDL PLS KELEQL++Q+E SLK +RS K Q  +DQL DL+ +EQ L +LNK L K L E++  + +    + W+     S    + +++ P   +G   P    G+  LQIGY+
Sbjct:   99 VEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVL---HMSWQDGGGHSGSSTVLADQ-PHHHQGLLHPHPDQGDHSLQIGYH 222          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.929e-18
Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = -3
Query:  245 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWE---ASSPRQNIPSNRYPFQSEGFFQP-LSGGNPILQIGYN 616
            VE LQ  QRN+LGEDL PLS KELEQL++Q+E SLK +RS K Q  +DQL DL+ +EQ L +LNK L K L E++  + +    + W+     S    + +++ P   +G   P    G+  LQIGY+
Sbjct:   99 VEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVL---HMSWQDGGGHSGSSTVLADQ-PHHHQGLLHPHPDQGDHSLQIGYH 222          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 56/148 (37.84%), Postives = 85/148 (57.43%), Query Frame = -3
Query:  173 ELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQSEGF-FQPLSGGNPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 613
            E LQR QRNL+GEDL PLS+K+LE L+ QL++SLK +RST+TQ  +DQL DLQ++E +L E N+AL + ++     +Q+   +L   A           +    E F  QP+    P LQIGY+    +   +     ++  ++ GW+
Sbjct:  106 ESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRME----GYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIE-CEPTLQIGYHQ--GDPGSVVTAGPSMNNYMGGWL 246          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = -3
Query:  281 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPS----NRYPFQSEGFFQPL 616
            VE+LQ+ QRNLLGEDL PL+T ELEQL+ Q+  +LK +RS KTQ  +D+L DL+++EQ+L + N+ L + LDE ++  +  P + PW  +    +       +  P Q E FFQ L
Sbjct:  102 VEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDV--EAAPPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFFQAL 215          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.572e-18
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = -3
Query:  170 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGYNPMGSEEAHIPVHA---QNVTGFIPGWML 616
            VE +Q+CQ++L+GEDL+ L+ KEL+QL+ QLE SLKH+RS K+Q  ++ +++LQ++E+ L E NK L K L E     +V   ++ W+ + P+ +  S+ +  +            P   I   P  + E    V A   Q+V   +P WML
Sbjct:  102 VETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVE---KQKVQKQQVQWDQTQPQTSSSSSSFMMRE---------ALPTTNISNYPAAAGERIEDVAAGQPQHVRIGLPPWML 241          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.572e-18
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = -3
Query:  170 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGYNPMGSEEAHIPVHA---QNVTGFIPGWML 616
            VE +Q+CQ++L+GEDL+ L+ KEL+QL+ QLE SLKH+RS K+Q  ++ +++LQ++E+ L E NK L K L E     +V   ++ W+ + P+ +  S+ +  +            P   I   P  + E    V A   Q+V   +P WML
Sbjct:  102 VETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVE---KQKVQKQQVQWDQTQPQTSSSSSSFMMRE---------ALPTTNISNYPAAAGERIEDVAAGQPQHVRIGLPPWML 241          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = -3
Query:  392 ELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESN 613
            E LQR QRNLLGEDL PL++KELE L+ QL+ SLK +RST+TQ  +DQL+D Q++E  L E N+ L + L E +
Sbjct:  104 EALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGS 177          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = -3
Query:  164 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQ--VPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGYN---PMGSEEAHI-PVHAQNVTGFIPGWMLRS 616
            ++ LQ+ QR LLGE LD L+ KEL+QL+HQLE SLKH+RS K Q   + +S+LQK+E+ L   N  L K ++     +   +  +R     ++P  + P+            P++  +PI     +   P GS E+   P  AQ     +P WMLR+
Sbjct:  102 LDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPT------------PVTAPDPIPTTNNSQSQPRGSGESEAQPSPAQAGNSKLPPWMLRT 246          
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = -3
Query:  164 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQ--VPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGYN---PMGSEEAHI-PVHAQNVTGFIPGWMLRS 616
            ++ LQ+ QR LLGE LD L+ KEL+QL+HQLE SLKH+RS K Q   + +S+LQK+E+ L   N  L K ++     +   +  +R     ++P  + P+            P++  +PI     +   P GS E+   P  AQ     +P WMLR+
Sbjct:  102 LDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPT------------PVTAPDPIPTTNNSQSQPRGSGESEAQPSPAQAGNSKLPPWMLRT 246          
The following BLAST results are available for this feature:
BLAST of CF835466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
AGL9_SINAL2.278e-1940.13Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MADS1_ORYSJ1.929e-1843.75MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI1.929e-1843.75MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MTF1_PEA3.290e-1837.84MADS-box transcription factor 1 OS=Pisum sativum G... [more]
MAD34_ORYSJ3.290e-1843.97MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MAD14_ORYSJ9.572e-1835.53MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI9.572e-1835.53MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL9_SOLLC3.079e-1656.76Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MAD18_ORYSJ1.170e-1535.03MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI1.170e-1535.03MADS-box transcription factor 18 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01E11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835466 ID=CF835466; Name=CF835466; organism=Citrus sinensis; type=EST; length=621bp
CATTACAAGAAAAAACCTTTGGAACAATACTTATTACTGTTTGCAGCAAA
TAATAATTGCAGGTATACATAAAGCGAAAGAGATGAAATCCCAACCATCA
AAAAGGAAATTTATTATAATTCCAATGATTAAGGTCATGTGAACTCATTT
TATTATCCAAGTATGATCTAAGCATCCAACCAGGGATGAATCCGGTGACA
TTTTGGGCATGGACTGGAATATGTGCCTCCTCCGAACCCATAGGATTGTA
CCCAATTTGCAAAATGGGATTGCCTCCCGATAGAGGCTGAAAGAACCCTT
CTGATTGAAATGGGTAACGATTGGAAGGTATGTTTTGCCGTGGTGATGAT
GCTTCCCATGGTAGTCGATGAGGAGGAACTTGATGAGAAATATTGCTTTC
GTCCAAGTTCTTCATCAGGGCTTTGTTAAGTTCAAGGAGAACTTGTTCTC
TTTTTTGAAGATCGGAAAGCTGATCAACCGTACATTGAGTCTTTGTTGAC
CTAACATGCTTCAAGGATGTCTCTAATTGATGATCAAGCTGCTCAAGCTC
CTTTGTGCTGAGCGGATCCAAATCTTCTCCGAGAAGGTTCCTCTGACATC
GCTGTAGGAGCTCAACTGGTG
back to top