CF835466
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.278e-19 Identity = 61/152 (40.13%), Postives = 88/152 (57.89%), Query Frame = -3 Query: 173 ELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQSE-----GFFQPLSGGNPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 613 + LQR QRNLLGEDL PLSTKELE L+ QL++SLK +R+ +TQ +DQL+DLQ +E++L E NK L L + +Q+P L + ++ R+ Q + FFQPL PILQ+GY ++ H + ++ GW+ Sbjct: 106 DALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLAD---GYQMP---LQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLE-CEPILQMGYQ---GQQDHGMEAGPSENNYMLGWL 247
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.929e-18 Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = -3 Query: 245 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWE---ASSPRQNIPSNRYPFQSEGFFQP-LSGGNPILQIGYN 616 VE LQ QRN+LGEDL PLS KELEQL++Q+E SLK +RS K Q +DQL DL+ +EQ L +LNK L K L E++ + + + W+ S + +++ P +G P G+ LQIGY+ Sbjct: 99 VEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVL---HMSWQDGGGHSGSSTVLADQ-PHHHQGLLHPHPDQGDHSLQIGYH 222
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 1.929e-18 Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = -3 Query: 245 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWE---ASSPRQNIPSNRYPFQSEGFFQP-LSGGNPILQIGYN 616 VE LQ QRN+LGEDL PLS KELEQL++Q+E SLK +RS K Q +DQL DL+ +EQ L +LNK L K L E++ + + + W+ S + +++ P +G P G+ LQIGY+ Sbjct: 99 VEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVL---HMSWQDGGGHSGSSTVLADQ-PHHHQGLLHPHPDQGDHSLQIGYH 222
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18 Identity = 56/148 (37.84%), Postives = 85/148 (57.43%), Query Frame = -3 Query: 173 ELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQSEGF-FQPLSGGNPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 613 E LQR QRNL+GEDL PLS+K+LE L+ QL++SLK +RST+TQ +DQL DLQ++E +L E N+AL + ++ +Q+ +L A + E F QP+ P LQIGY+ + + ++ ++ GW+ Sbjct: 106 ESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRME----GYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIE-CEPTLQIGYHQ--GDPGSVVTAGPSMNNYMGGWL 246
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18 Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = -3 Query: 281 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPS----NRYPFQSEGFFQPL 616 VE+LQ+ QRNLLGEDL PL+T ELEQL+ Q+ +LK +RS KTQ +D+L DL+++EQ+L + N+ L + LDE ++ + P + PW + + + P Q E FFQ L Sbjct: 102 VEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDV--EAAPPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFFQAL 215
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 9.572e-18 Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = -3 Query: 170 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGYNPMGSEEAHIPVHA---QNVTGFIPGWML 616 VE +Q+CQ++L+GEDL+ L+ KEL+QL+ QLE SLKH+RS K+Q ++ +++LQ++E+ L E NK L K L E +V ++ W+ + P+ + S+ + + P I P + E V A Q+V +P WML Sbjct: 102 VETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVE---KQKVQKQQVQWDQTQPQTSSSSSSFMMRE---------ALPTTNISNYPAAAGERIEDVAAGQPQHVRIGLPPWML 241
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.572e-18 Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = -3 Query: 170 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQVPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGYNPMGSEEAHIPVHA---QNVTGFIPGWML 616 VE +Q+CQ++L+GEDL+ L+ KEL+QL+ QLE SLKH+RS K+Q ++ +++LQ++E+ L E NK L K L E +V ++ W+ + P+ + S+ + + P I P + E V A Q+V +P WML Sbjct: 102 VETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVE---KQKVQKQQVQWDQTQPQTSSSSSSFMMRE---------ALPTTNISNYPAAAGERIEDVAAGQPQHVRIGLPPWML 241
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16 Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = -3 Query: 392 ELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESN 613 E LQR QRNLLGEDL PL++KELE L+ QL+ SLK +RST+TQ +DQL+D Q++E L E N+ L + L E + Sbjct: 104 EALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGS 177
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15 Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = -3 Query: 164 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQ--VPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGYN---PMGSEEAHI-PVHAQNVTGFIPGWMLRS 616 ++ LQ+ QR LLGE LD L+ KEL+QL+HQLE SLKH+RS K Q + +S+LQK+E+ L N L K ++ + + +R ++P + P+ P++ +PI + P GS E+ P AQ +P WMLR+ Sbjct: 102 LDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPT------------PVTAPDPIPTTNNSQSQPRGSGESEAQPSPAQAGNSKLPPWMLRT 246
BLAST of CF835466 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15 Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = -3 Query: 164 VELLQRCQRNLLGEDLDPLSTKELEQLDHQLETSLKHVRSTKTQCTVDQLSDLQKREQVLLELNKALMKNLDESNISHQ--VPPHRLPWEASSPRQNIPSNRYPFQSEGFFQPLSGGNPILQIGYN---PMGSEEAHI-PVHAQNVTGFIPGWMLRS 616 ++ LQ+ QR LLGE LD L+ KEL+QL+HQLE SLKH+RS K Q + +S+LQK+E+ L N L K ++ + + +R ++P + P+ P++ +PI + P GS E+ P AQ +P WMLR+ Sbjct: 102 LDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPT------------PVTAPDPIPTTNNSQSQPRGSGESEAQPSPAQAGNSKLPPWMLRT 246 The following BLAST results are available for this feature:
BLAST of CF835466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835466 ID=CF835466; Name=CF835466; organism=Citrus sinensis; type=EST; length=621bpback to top |