CF835467

Overview
NameCF835467
Unique NameCF835467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835467_ssr26 microsatellite CF835467_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 29/60 (48.33%), Postives = 47/60 (78.33%), Query Frame = 2 
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSS 244
            MGR +++++R+ ++ NR+VTF +R+ GL+ KA ELSVLCD E ALI+F+   KL+++ S+
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST 60
[Close]
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 29/60 (48.33%), Postives = 47/60 (78.33%), Query Frame = 2 
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSS 244
            MGR +++++R+ ++ NR+VTF +R+ GL+ KA ELSVLCD E ALI+F+   KL+++ S+
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST 60
[Close]
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 36/130 (27.69%), Postives = 69/130 (53.08%), Query Frame = 2 
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPI---------------------IMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQR 391
            MGR ++++ R+ ++ NR+VTF +R+ GL+ KA ELSVLCD E ALI+F+   KL+++ S+ +                     I++ L +     C + + +   + T  T ++Y ++    + + R+ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHK 130
[Close]
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 36/130 (27.69%), Postives = 69/130 (53.08%), Query Frame = 2 
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPI---------------------IMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQR 391
            MGR ++++ R+ ++ NR+VTF +R+ GL+ KA ELSVLCD E ALI+F+   KL+++ S+ +                     I++ L +     C + + +   + T  T ++Y ++    + + R+ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESGTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHK 130
[Close]
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 36/130 (27.69%), Postives = 69/130 (53.08%), Query Frame = 2 
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPI---------------------IMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQR 391
            MGR ++++ R+ ++ NR+VTF +R+ GL+ KA ELSVLCD E ALI+F+   KL+++ S+ +                     I++ L +     C + + +   + T  T ++Y ++    + + R+ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHK 130
[Close]
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 36/130 (27.69%), Postives = 69/130 (53.08%), Query Frame = 2 
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPI---------------------IMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQR 391
            MGR ++++ R+ ++ NR+VTF +R+ GL+ KA ELSVLCD E ALI+F+   KL+++ S+ +                     I++ L +     C + + +   + T  T ++Y ++    + + R+ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHK 130
The following BLAST results are available for this feature:
BLAST of CF835467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
MEF2D_MOUSE8.037e-1148.33Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN8.037e-1148.33Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2A_RAT8.037e-1127.69Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PIG8.037e-1127.69Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_HUMAN8.037e-1127.69Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_BOVIN8.037e-1127.69Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835467 ID=CF835467; Name=CF835467; organism=Citrus sinensis; type=EST; length=472bp
TTAACCAACACCAGTATAGGTAGAAAGAGAGAGAGAGTGAGTGTGTGGAA
ATCTCTTGAAAATTATGGGGAGAGGAAGAGTTGAACTGAAGAGAGTAGAG
AACGATATTAACAGGGAAGTTACTTTTGCCGAGAGAAGAAATGGCCTGCT
GAACAAAGCTGATGAGCTCTCAGTTCTATGTGATGCTGAAGATGCTCTTA
TCATGTTCTCTAAGCGTGGCAAGCTCTATGAGTTCTGTAGCAGCCCTATC
ATTATGAAAACGCTTGAACGATATCATCGGTGCAGTTGTGGTGCACACGA
AGGCAACCGGCCTCCCATTGAAACTCAGAGCACCTACCAGGAATATTTGA
GGTTGAAAACAGCAGTTGAGCTCCTACAGCGATCTCAGAGGAACCTTCTT
GGAGAACATTTGGATCCGCTCAGCACAAATGAGCTTGAGCAGCTTGAGCA
TCAACTAGAGACATCCTTGAAG
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