CF835467

Overview
NameCF835467
Unique NameCF835467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835467_ssr26 microsatellite CF835467_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 2.743e-35
Identity = 81/135 (60.00%), Postives = 97/135 (71.85%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRGRVE+KR+EN INR+VTF++RRNGLL KA ELSVLCDAE ALI+FS RGKLYEF  S  I  T+ERY+RC   +   N+P   TQS  QE  +LK+  E L R+ RNLLGE L  +   EL+ LE QLE +L
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSVGIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAAL 134          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 4.679e-35
Identity = 77/139 (55.40%), Postives = 101/139 (72.66%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPP--IETQSTY-QEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRVELKR+EN INR+VTF++RR GLL KA E+SVLCDAE +LI+FS +GKL+E+ S   + K LERY R S    +   P   +  Q+ +  EY RLK  +ELL+R+QR+ LGE L+P+S  +L+ LE QLET+LK
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALK 139          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.033e-34
Identity = 79/137 (57.66%), Postives = 97/137 (70.80%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTY-QEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG V+L+R+EN INR+VTF++RRNGLL KA E+SVLCDA+ ALI+FS +GKLYEF S   +   LERY R S        P  E Q  +  EY  LK+ ++ LQ+SQR LLGE LD L+  EL+QLEHQLE SLK
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.033e-34
Identity = 79/137 (57.66%), Postives = 97/137 (70.80%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTY-QEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG V+L+R+EN INR+VTF++RRNGLL KA E+SVLCDA+ ALI+FS +GKLYEF S   +   LERY R S        P  E Q  +  EY  LK+ ++ LQ+SQR LLGE LD L+  EL+QLEHQLE SLK
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.505e-33
Identity = 73/137 (53.28%), Postives = 99/137 (72.26%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTY-QEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRV+LKR+EN INR+VTF++RR GLL KA E+SVLCDAE AL++FS +GKL+E+ +   + K LERY R S    +   P  +  + +  EY RLK  +ELL+R+QR+ LGE L  +S+ EL+ LE QL+T+LK
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.568e-33
Identity = 74/137 (54.01%), Postives = 99/137 (72.26%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTY-QEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG+V+LKR+EN INR+VTF++RR+GLL KA+E+SVLCDAE ALI+FS +GKLYE+ +   + K LERY R S           +TQ  +  EY +LK  VE +Q+ Q++L+GE L+ L+  EL+QLE QLE SLK
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.568e-33
Identity = 73/137 (53.28%), Postives = 98/137 (71.53%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTY-QEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRV+LKR+EN INR+VTF++RR GLL KA E+SVLCDAE AL++FS +GKL+E+ +   + K LERY R S    +   P  +  + +  EY RLK  +ELL+R+QR+ LGE L  +S  EL+ LE QL+T+LK
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.470e-33
Identity = 73/137 (53.28%), Postives = 99/137 (72.26%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTY-QEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG+V+LKR+EN INR+VTF++RR+GLL KA+E+SVLCDAE ALI+FS +GKLY++ +   + K LERY R S           +TQ  +  EY +LK  VE +Q+ Q++L+GE L+ L+  EL+QLE QLE SLK
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 6.324e-32
Identity = 71/137 (51.82%), Postives = 97/137 (70.80%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTY-QEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG+V+LKR+EN INR+VTF++RRNGLL KA E+SVLCDAE A I+FS +GKLYE+ +   + K LERY R S           E++  +  EY +LK  +E +Q+  ++L+GE L+ L+  EL+QLE QLE+SLK
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.324e-32
Identity = 69/137 (50.36%), Postives = 100/137 (72.99%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHE-GNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRV+LKR+EN INR+VTF++RR+GLL KA E+SVLCDAE ALI+FS +GKL+E+ +   + + LERY R      +   R   ++++   E+ +LK  VE+L++++RN +GE LD LS  EL+ LEHQL+ ++K
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIK 137          
The following BLAST results are available for this feature:
BLAST of CF835467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
AGL6_ARATH2.743e-3560.00Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
CAL_ARATH4.679e-3555.40Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD18_ORYSJ3.033e-3457.66MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI3.033e-3457.66MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AP1_SINAL1.505e-3353.28Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
MAD14_ORYSJ2.568e-3354.01MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AP1_ARATH2.568e-3353.28Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD14_ORYSI7.470e-3353.28MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD15_ORYSJ6.324e-3251.82MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AGL8_ARATH6.324e-3250.36Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835467 ID=CF835467; Name=CF835467; organism=Citrus sinensis; type=EST; length=472bp
TTAACCAACACCAGTATAGGTAGAAAGAGAGAGAGAGTGAGTGTGTGGAA
ATCTCTTGAAAATTATGGGGAGAGGAAGAGTTGAACTGAAGAGAGTAGAG
AACGATATTAACAGGGAAGTTACTTTTGCCGAGAGAAGAAATGGCCTGCT
GAACAAAGCTGATGAGCTCTCAGTTCTATGTGATGCTGAAGATGCTCTTA
TCATGTTCTCTAAGCGTGGCAAGCTCTATGAGTTCTGTAGCAGCCCTATC
ATTATGAAAACGCTTGAACGATATCATCGGTGCAGTTGTGGTGCACACGA
AGGCAACCGGCCTCCCATTGAAACTCAGAGCACCTACCAGGAATATTTGA
GGTTGAAAACAGCAGTTGAGCTCCTACAGCGATCTCAGAGGAACCTTCTT
GGAGAACATTTGGATCCGCTCAGCACAAATGAGCTTGAGCAGCTTGAGCA
TCAACTAGAGACATCCTTGAAG
back to top