CF835467

Overview
NameCF835467
Unique NameCF835467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.259e-32
Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHE-GNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRV+LKR+EN INR+VTF++RR+GLL KA E+SVLCDAE AL++FS +GKL+E+ +   + K LERY R      +   R   ++++   E+ +LK  VE+L++++RN +GE LD LS  EL+ LEHQL  ++K
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.354e-31
Identity = 71/139 (51.08%), Postives = 99/139 (71.22%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQ---EYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRV+LKR+EN INR+VTF++RR+GLL KA E+SVLCDAE  LI+FS +GKL+E+ +   + + LERY R S    E    P +  S      E+ +LK  +E+LQR+Q++ +GE L+ LS  EL+ LEHQL+++LK
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFA--EKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.193e-30
Identity = 70/141 (49.65%), Postives = 99/141 (70.21%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQ-----EYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRV+LKR+EN INR+VTF++RR+GLL KA E+SVLCDAE  LI+FS +GKL+E+ +   + + LERY R S       R  + T  T       E+ +LK  +E+LQR+Q++ +GE L+ L+  EL+ LEHQL+++LK
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSF----AERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.319e-29
Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHR-CSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++E+KR+EN  NR+VTF +RRNGLL KA ELSVLCDAE ALI+FS RG+LYE+ ++  I  T+ERY + CS   +      I      QE  +L+  ++ +Q S RNL+G+ L  LS  EL+Q+E++LE ++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNN-IRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAI 135          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.722e-29
Identity = 72/135 (53.33%), Postives = 96/135 (71.11%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG+VE+KR+EN I R+VTF++R++GLL KA ELSVLCDAE +LI+FS  GKLYEF S+  + +T+ERY+RC     + N    +TQ   QE  +LK   E L R+ RNL+GE L+ +S  EL+ LE QLE +L
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEF-SNVGVGRTIERYYRCKDNLLD-NDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGAL 133          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.011e-29
Identity = 70/138 (50.72%), Postives = 97/138 (70.29%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQ--STYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGRV+LKR+EN INR+VTF++RR+GLL KA E+SVLCDAE  LI+FS +GKL+E+ +   + + LERY R S  A +   P   T   S   E  +LK  +E+LQR+++  +GE L+ L+  EL+ LEHQL ++LK
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSF-AEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALK 137          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 6.544e-29
Identity = 67/139 (48.20%), Postives = 99/139 (71.22%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRC-SCGAHEGNRPPIET---QSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRGR+E+KR+EN  +R+VTF +RRNGLL KA ELSVLCDAE ALI+FS RG+LYE+ ++  +  T++RY +  +CG+  G  P IE    Q   QE  +L+  +++LQ + ++L+G+++  LS  EL+QLE +LE  +
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSG-APLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGI 138          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 8.547e-29
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            M RG+ E+KR+EN  +R+VTF++RRNGLL KA ELSVLCDAE ALI+FS RGKLYEF SS  I KT+ERY +        ++    +Q +  E   L   +E L+ S R ++GE LD  S  EL+QLE+QL+ SL
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSL 135          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.248e-28
Identity = 65/136 (47.79%), Postives = 92/136 (67.65%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHR-CSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            +GRG++E+KR+EN  NR+VTF +RRNGLL KA ELSVLCDAE ALI+FS RG+LYE+ ++  +  T+ERY + CS  ++ G+      Q   QE  +L+  +  LQ   RN+LGE L  LS  +L+ LE ++E  +
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGI 151          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.242e-28
Identity = 68/135 (50.37%), Postives = 88/135 (65.19%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            M RGR ELKR+EN  +R+VTF++RRNGLL KA ELSVLCDAE ALI+FS RG+LYEF S+P + KT++RY   +           + Q    + L L   +E L  S+R +LGE+L+  S  EL  LE +LE SL
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSL 135          
The following BLAST results are available for this feature:
BLAST of CF835467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
AGL8_SINAL8.259e-3250.36Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL8_SOLLC5.354e-3151.08Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLTU1.193e-3049.65Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL11_ARATH1.319e-2949.26Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AGL13_ARATH1.722e-2953.33Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL8_SOLCO5.011e-2950.72Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD13_ORYSJ6.544e-2948.20MADS-box transcription factor 13 OS=Oryza sativa s... [more]
AGL14_ARATH8.547e-2951.85Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
AG_TOBAC3.248e-2847.79Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
MAD56_ORYSJ4.242e-2850.37MADS-box transcription factor 56 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835467 ID=CF835467; Name=CF835467; organism=Citrus sinensis; type=EST; length=472bp
TTAACCAACACCAGTATAGGTAGAAAGAGAGAGAGAGTGAGTGTGTGGAA
ATCTCTTGAAAATTATGGGGAGAGGAAGAGTTGAACTGAAGAGAGTAGAG
AACGATATTAACAGGGAAGTTACTTTTGCCGAGAGAAGAAATGGCCTGCT
GAACAAAGCTGATGAGCTCTCAGTTCTATGTGATGCTGAAGATGCTCTTA
TCATGTTCTCTAAGCGTGGCAAGCTCTATGAGTTCTGTAGCAGCCCTATC
ATTATGAAAACGCTTGAACGATATCATCGGTGCAGTTGTGGTGCACACGA
AGGCAACCGGCCTCCCATTGAAACTCAGAGCACCTACCAGGAATATTTGA
GGTTGAAAACAGCAGTTGAGCTCCTACAGCGATCTCAGAGGAACCTTCTT
GGAGAACATTTGGATCCGCTCAGCACAAATGAGCTTGAGCAGCTTGAGCA
TCAACTAGAGACATCCTTGAAG
back to top