CF835467

Overview
NameCF835467
Unique NameCF835467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 4.109e-23
Identity = 55/136 (40.44%), Postives = 86/136 (63.24%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG++ ++R++N  +R+VTF++RRNG+  KA EL++LCDAE  L++FS  G+LYE+ SS  +   ++RY +          P  E +   +E   L+  +  LQ + R L+GE L  L+  EL+ LE+QLE SL+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY-SSTSMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLR 135          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 9.153e-23
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKT-LERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG++ ++R++N  +R+VTF++RRNGLL KA ELS+LCDAE  L++FS  G+LYEF S+   MKT ++RY         GN    E +   +E   L+  +  LQ S + L+GE L  L   +L+ LE++LE SL+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTN--MKTVIDRYTNAKEELLGGNATS-EIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLR 134          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.561e-22
Identity = 55/136 (40.44%), Postives = 85/136 (62.50%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRG++ ++++++  +R+VTF++RR GL+ KA EL++LCDAE  LI+FS   KLY+F SS  +  T+ER++       E   P  E +   +E   L+  +  LQ + R L G  L+ LS  EL+ +E QLE SL+
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSS-VKSTIERFNTAKMEEQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLR 135          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.039e-22
Identity = 63/135 (46.67%), Postives = 88/135 (65.19%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++E+KR+EN  +R+VTF++RR+GLL KA ELSVLCDAE A+I+FSK GKL+E+ SS  + +TL RY     G H+ +    + +    E   LK  +  LQ     L G+ L+PL+  EL+ LE QL  +L
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY-SSTGMKQTLSRY-----GNHQSSSAS-KAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHAL 128          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.663e-22
Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAH--EGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++E+KR+EN  NR+VTF++RR GLL KA+EL+VLCDA   +++FS  GK++E+CS    ++ L   ++ +  +H  E N      Q    E  R+K  +E L+   R   G+ L  L+ +++  LE QLE S+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHATNSHFEEIN----HDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSV 133          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.933e-22
Identity = 60/139 (43.17%), Postives = 84/139 (60.43%), Query Frame = 2
Query:   62 IMGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAH---EGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            IMGRG++E+KR+EN  +R+VTF++RR GLL K  ELSVLCDA+  LI+FS +GKL+E+CS P  M  +   +  + GA    E NR  +     Y E  +++     LQ S +   G+ L      EL +LE QLE +L
Sbjct:    3 IMGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQL-----YDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHAL 136          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.012e-21
Identity = 54/137 (39.42%), Postives = 83/137 (60.58%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAH--EGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++E+KR+EN  NR+VTF++RR GLL KA+EL+VLCDA   +++FS  GK++E+CS    ++ L  +++     H  E N      Q  + E  R++  +E L    R   G+ L  L+  ++  LE QLE S+
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTHFEEIN----HDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSV 133          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.012e-21
Identity = 54/135 (40.00%), Postives = 84/135 (62.22%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++ +KR++N +NR+VTF++RR GL+ KA EL++LCDA+  LI+FS  G+LY+F SS  +   +ERY            P  E +   +E   L+  V+ L  + R LLGE +   +  +L+ L++Q+E SL
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSS-MKSIIERYQEAGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSL 134          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.726e-21
Identity = 56/136 (41.18%), Postives = 85/136 (62.50%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQST-YQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            M R ++++++++N   R+VTF++RR GL  KA+ELSVLCDA+ ALI+FS  GKL+EFCSS  + + LER++  S    + ++P +E Q     ++ R+   +       R + GE L  L   EL+QLE  LET L
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSS-MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGL 135          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.022e-21
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMK-TLERYHRCSCGAHE-GNR--PPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++E+KR+EN+ +R+VTF++RR+GL+ K  ELSVLCDA+  LI+FS +GKL E+C+ P  MK  ++RY +      E  NR  P  +     +E  R+K     LQ + +   G+ L  +   EL +LE  L+ SL
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSL 139          
The following BLAST results are available for this feature:
BLAST of CF835467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
MAD27_ORYSJ4.109e-2340.44MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD57_ORYSJ9.153e-2343.80MADS-box transcription factor 57 OS=Oryza sativa s... [more]
AGL17_ARATH1.561e-2240.44Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
AGL15_ARATH2.039e-2246.67Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
M17_MAIZE2.663e-2240.15MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
FBP24_PETHY5.933e-2243.17MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD29_ORYSJ1.012e-2139.42MADS-box transcription factor 29 OS=Oryza sativa s... [more]
MAD25_ORYSJ1.012e-2140.00MADS-box transcription factor 25 OS=Oryza sativa s... [more]
SVP_ARATH1.726e-2141.18MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
DEF21_ANTMA5.022e-2141.73MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835467 ID=CF835467; Name=CF835467; organism=Citrus sinensis; type=EST; length=472bp
TTAACCAACACCAGTATAGGTAGAAAGAGAGAGAGAGTGAGTGTGTGGAA
ATCTCTTGAAAATTATGGGGAGAGGAAGAGTTGAACTGAAGAGAGTAGAG
AACGATATTAACAGGGAAGTTACTTTTGCCGAGAGAAGAAATGGCCTGCT
GAACAAAGCTGATGAGCTCTCAGTTCTATGTGATGCTGAAGATGCTCTTA
TCATGTTCTCTAAGCGTGGCAAGCTCTATGAGTTCTGTAGCAGCCCTATC
ATTATGAAAACGCTTGAACGATATCATCGGTGCAGTTGTGGTGCACACGA
AGGCAACCGGCCTCCCATTGAAACTCAGAGCACCTACCAGGAATATTTGA
GGTTGAAAACAGCAGTTGAGCTCCTACAGCGATCTCAGAGGAACCTTCTT
GGAGAACATTTGGATCCGCTCAGCACAAATGAGCTTGAGCAGCTTGAGCA
TCAACTAGAGACATCCTTGAAG
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