CF835467

Overview
NameCF835467
Unique NameCF835467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835467_ssr26 microsatellite CF835467_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.237e-19
Identity = 54/136 (39.71%), Postives = 87/136 (63.97%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRP-PIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++E+KR+EN  NR+VT+++RRNG+L KA E+SVLCDA  ++I+F+  GK++EF SS  ++  L++YH+ +     G R    + ++   E  ++K   + +Q   R+L GE +  L+  EL  LE  L+  L
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHKLT-----GRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGL 130          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.237e-19
Identity = 55/136 (40.44%), Postives = 87/136 (63.97%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNR-PPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++E+KR+EN  NR+VT+++RRNG+L KA E+SVLCDA  ++I+F+  GK++EF SS  ++  L++YH+ +     G R    + ++   E  ++K   + +Q   R+L GE +  L+  EL  LE  LE  L
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHKLT-----GRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGL 130          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.110e-19
Identity = 52/140 (37.14%), Postives = 79/140 (56.43%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQ--------EYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLE 460
            M RG+++LKR+EN ++R+VTF +RR GLL KA ELSVLCDAE  +++FS +GKL+E  +   +   +++Y +C+ G    +      Q   Q        E   LK  +E+LQ+    + G     ++  EL  LE  LE
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLE 140          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.599e-19
Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCS-SPIIMKTLERYHRCSCGAHEGNRP-PIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++E+KR+EN  NR+VT+++RRNG++ KA E++VLCDA+ +LI+F   GK++E+CS S  +   L+ Y + S     G R    + ++   E  R+K   + +Q   R+L GE ++ L+  EL  LE  L   L
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTS-----GRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGL 132          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.368e-18
Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEF-CSSPIIMKTLERYHRCSCGAHEGNRP-PIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++E+KR+EN  NR VTF++RRNGL+ KA E++VLCDA+ ALI+F+  GK+ ++ C S  +   L++Y + S     G +    + ++   E  R+K   + LQ   R+L GE +  L+   L  +EH +E  L
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLS-----GKKLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGL 132          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.368e-18
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLE 460
            M RG+V+++R+EN ++R+VTF +RR GLL KA ELSVLCDA+  +I+FS +GKL+E  ++  +   +ERY     G           Q   Q    L+  ++LLQR  R+  G     ++ ++L  LE  LE
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGALQRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLE 132          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.333e-18
Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGR +VE+KR+EN  +R+VTF++RRNGL+ KA +LS+LC++  A+++ S  GKLY+  S   + K ++RY       H      ++     + YL LK   ELL+  Q  L   ++D  S + L  LE QLET+L
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEI----HHADELEALDLAEKTRNYLPLK---ELLEIVQSKLEESNVDNASVDTLISLEEQLETAL 128          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.047e-18
Identity = 55/144 (38.19%), Postives = 82/144 (56.94%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTL-ERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNL-------LGEHLDPLSTNELEQLEHQLETSLK 472
            M RG++++KR+EN  NR+VT+++RRNGL  KA EL+VLCDA  ++IMFS   KL+E+ S     K + + Y   S          ++  +T  +Y R++     L  + RNL       LGE LD L   EL +LE ++E + K
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTIS---------DVDVWAT--QYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFK 133          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.197e-18
Identity = 59/143 (41.26%), Postives = 82/143 (57.34%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIM-KTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNL-------LGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++E+K++EN   R+VTF++RR GL+ K  ELS+LCDA   LI+FS  GKL EFCS    M + ++RY   +     G R P      + +  +L   +ELL+R   NL        G  L  +  NEL+ LE QLE S+
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTN-----GLRLP----DHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSV 134          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.579e-17
Identity = 52/137 (37.96%), Postives = 79/137 (57.66%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSS------PIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQL 457
            MGRG++E+KR+EN  NR+VTF++RR G+L KA E+ VLCDAE  +++FS  GKL ++C+       P + + LE+Y   S       +     +S   E  R+K   + +Q   R++ GE L+ L   EL  +E  L
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEK----HKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEAL 133          
The following BLAST results are available for this feature:
BLAST of CF835467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
GLOB_TOBAC1.237e-1939.71Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
FBP1_PETHY1.237e-1940.44Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
AGL12_ARATH2.110e-1937.14Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
MADS2_PETHY3.599e-1939.42Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
PIST_ARATH1.368e-1839.42Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD33_ORYSJ1.368e-1838.64MADS-box transcription factor 33 OS=Oryza sativa s... [more]
AGL31_ARATH2.333e-1840.00Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
AP3_ARATH3.047e-1838.19Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
TT16_ARATH5.197e-1841.26Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MADS4_ORYSJ2.579e-1737.96MADS-box transcription factor 4 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835467 ID=CF835467; Name=CF835467; organism=Citrus sinensis; type=EST; length=472bp
TTAACCAACACCAGTATAGGTAGAAAGAGAGAGAGAGTGAGTGTGTGGAA
ATCTCTTGAAAATTATGGGGAGAGGAAGAGTTGAACTGAAGAGAGTAGAG
AACGATATTAACAGGGAAGTTACTTTTGCCGAGAGAAGAAATGGCCTGCT
GAACAAAGCTGATGAGCTCTCAGTTCTATGTGATGCTGAAGATGCTCTTA
TCATGTTCTCTAAGCGTGGCAAGCTCTATGAGTTCTGTAGCAGCCCTATC
ATTATGAAAACGCTTGAACGATATCATCGGTGCAGTTGTGGTGCACACGA
AGGCAACCGGCCTCCCATTGAAACTCAGAGCACCTACCAGGAATATTTGA
GGTTGAAAACAGCAGTTGAGCTCCTACAGCGATCTCAGAGGAACCTTCTT
GGAGAACATTTGGATCCGCTCAGCACAAATGAGCTTGAGCAGCTTGAGCA
TCAACTAGAGACATCCTTGAAG
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