CF835467

Overview
NameCF835467
Unique NameCF835467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835467_ssr26 microsatellite CF835467_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.746e-17
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  143 GLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMK-TLERYHRCSCGAHEGNRPPI-ETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            GLL KA EL++LCDA+  +I+FS  GK++EF S PI M+  ++RY + S     GN  P+ + Q  Y E  R+K  ++ LQ + R+  GE L  L+ NE+ QLE QLE S+
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLS-----GNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISV 107          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17
Identity = 52/136 (38.24%), Postives = 75/136 (55.15%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            MGRGR E+KR+EN   R+ TF +RR+GL  KA EL+VLCDA+  L++FS  GKLY F  SP +    E   R     H      I  Q    E  ++ +  +LL++  R +  +  +  +   LE LEH LE +++
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFL-SPTVPSVREFVERYEATTHTKVWADIR-QERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMR 134          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.802e-17
Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYL-RLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSLK 472
            M RG++++KR+EN  NR+VT+++RRNGL  KA ELSVLCDA+ ++IM S   KL+E+ S     K L   ++ + G    +          QE+L +L      L+R  R  +GE L+ L   ++  L   ++ SLK
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWS----SHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLK 133          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.280e-16
Identity = 46/135 (34.07%), Postives = 82/135 (60.74%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            MGRG++E++++EN  NR+VTF++RRNG++ KA EL+VLCDA+ +L+M S   KL+ + S  + +K +   ++   G     +     Q  +++ L L +   LL+R     +G  L+ L+  EL  L+ ++E ++
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNS---LLRREISRRMGGDLEGLTLVELSALQQEMEEAI 132          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 4.865e-16
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 2
Query:   71 RGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPPIETQ-STYQEYLRLKTAVELLQRSQRNLLGEHLDPLSTNELEQLEHQLETSL 469
            R R+ ++R++N   R+VTF++RR GL  KA+ELS+LCDAE  L++FS  GKL++F S+  + + ++RY+  S          ++ Q        RLK  +       R + GE L  L+  +L++LE  LE+ L
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTS-MEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGL 154          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.415e-15
Identity = 54/159 (33.96%), Postives = 85/159 (53.46%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERYHRCSCGAHEGNRPP-----------IETQSTYQEYLRLKTAVELLQRSQ------------RNLLGEHLDPLSTNELEQLEHQLETSLK 472
            M R R E++R+E+   R+VTF++RR GL  KA+EL+VLCDA+ AL++FS  GKL +F SS  + + +++Y   S    + ++ P           + T +    Y+ L   +E  + S             R + GE L+ LS  EL+Q+E  LE  L+
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSN-MNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQ 158          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.566e-12
Identity = 33/70 (47.14%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSSPIIMKTLERY 274
            MGR ++ ++++ N+ NR+ TF +R+NGL+ KA ELS+LCD E A+I+FS   KL+++ SS  + K L RY
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRY 71          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.712e-11
Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSS 244
            MGR ++++ R+ ++ NR+VTF +R+ G++ KA ELSVLCD E ALI+FS   KLY++ S+
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYAST 60          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 29/60 (48.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSS 244
            MGR +++++R+ ++ NR+VTF +R+ GL+ KA ELSVLCD E ALI+F+   KL+++ S+
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST 60          
BLAST of CF835467 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 29/60 (48.33%), Postives = 47/60 (78.33%), Query Frame = 2
Query:   65 MGRGRVELKRVENDINREVTFAERRNGLLNKADELSVLCDAEDALIMFSKRGKLYEFCSS 244
            MGR +++++R+ ++ NR+VTF +R+ GL+ KA ELSVLCD E ALI+F+   KL+++ S+
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST 60          
The following BLAST results are available for this feature:
BLAST of CF835467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
AP32_ASAEU5.746e-1744.14MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MAD32_ORYSJ9.802e-1738.24MADS-box transcription factor 32 OS=Oryza sativa s... [more]
DEFA_ANTMA9.802e-1737.23Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
CMB2_DIACA1.280e-1634.07MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MAD47_ORYSJ4.865e-1635.82MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD55_ORYSJ1.415e-1533.96MADS-box transcription factor 55 OS=Oryza sativa s... [more]
SRFC_DICDI5.566e-1247.14Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2_DROME4.712e-1150.00Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA8.037e-1148.33Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT8.037e-1148.33Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835467 ID=CF835467; Name=CF835467; organism=Citrus sinensis; type=EST; length=472bp
TTAACCAACACCAGTATAGGTAGAAAGAGAGAGAGAGTGAGTGTGTGGAA
ATCTCTTGAAAATTATGGGGAGAGGAAGAGTTGAACTGAAGAGAGTAGAG
AACGATATTAACAGGGAAGTTACTTTTGCCGAGAGAAGAAATGGCCTGCT
GAACAAAGCTGATGAGCTCTCAGTTCTATGTGATGCTGAAGATGCTCTTA
TCATGTTCTCTAAGCGTGGCAAGCTCTATGAGTTCTGTAGCAGCCCTATC
ATTATGAAAACGCTTGAACGATATCATCGGTGCAGTTGTGGTGCACACGA
AGGCAACCGGCCTCCCATTGAAACTCAGAGCACCTACCAGGAATATTTGA
GGTTGAAAACAGCAGTTGAGCTCCTACAGCGATCTCAGAGGAACCTTCTT
GGAGAACATTTGGATCCGCTCAGCACAAATGAGCTTGAGCAGCTTGAGCA
TCAACTAGAGACATCCTTGAAG
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