CF835468

Overview
NameCF835468
Unique NameCF835468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1217 contig Csv1_Contig1217:213..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835468 vs. ExPASy Swiss-Prot
Match: CCPR_CANAL (Cytochrome c peroxidase, mitochondrial OS=Candida albicans GN=CCP1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.120e-23
Identity = 71/213 (33.33%), Postives = 101/213 (47.42%), Query Frame = -1
Query:  164 TGGPFG-TMRLAVEQAHSANNGLDIAVRLWEPFKEQFPTISYVDLYQLAGVVGVEVTGGPDIPFHPGRDD---KAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERELLTG-----------------------------------EKDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFTDYAEAHLKLSELG 685
            +GG +G TM  A E+    N GL +       F  ++P IS  DL+ L GV  V+ +GGP I + PGR D    ++ P  GRLPDA +   +++ +F A+MG ++++ VAL G H LGRCHK      G                                   E    + LP+D AL ++  F   V+ YA D+D FF D+A+A  KL   G
Sbjct:  134 SGGSYGGTMIFAPEEFDPENAGLQVGREFLMEFLVKYPWISRGDLWTLGGVAAVQESGGPKIEWRPGRVDDNTASKVPPNGRLPDASKDGKYVKDLF-ARMGFNERETVALLGAHVLGRCHKHNSGYDGPWGPSFNQFTNVFYTTLLGDWHVKKWDGKKQYEDDETGEFMMLPTDMALKEESYFLKYVKMYADDQDLFFKDFAKAFSKLISNG 345          
BLAST of CF835468 vs. ExPASy Swiss-Prot
Match: APX6_ARATH (Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 60/193 (31.09%), Postives = 95/193 (49.22%), Query Frame = -1
Query:  164 TGGPFGTMRLAVEQAHSANNGLDIAVRLWEPFK---EQFPTISYVDLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGR----------------CHKERELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFTDYAEAHLKLSELG 685
            +GG  G+  +A E     N GL  ++++    K   ++   +S+ D+  +AG   V + GGP IP   GR D A+P  EG+LP        L++ F  + G S +++VALSG HT+G                   ++    T +   ++ LPSD AL+ D      V++YA D+D FF D+  A++KL   G
Sbjct:  134 SGGINGS--IAYELERPENIGLKKSLKVLAKAKVKVDEIQPVSWADMISVAGSEAVSICGGPTIPVVLGRLDSAQPDPEGKLPPETLSASGLKECF-KRKGFSTQELVALSGAHTIGSKGFGDPTVFDNAYYKILLEKPWTSTSKMTSMVGLPSDHALVQDDECLRWVKRYAEDQDKFFEDFTNAYIKLVNSG 323          
The following BLAST results are available for this feature:
BLAST of CF835468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CCPR_CANAL7.120e-2333.33Cytochrome c peroxidase, mitochondrial OS=Candida ... [more]
APX6_ARATH9.958e-1731.09Putative L-ascorbate peroxidase 6 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835468 ID=CF835468; Name=CF835468; organism=Citrus sinensis; type=EST; length=688bp
ATTTCCTAAACACCCTGTGCAATAAAACAAAACCACAAAATTCAACCAAC
AACATCTTGAAATTCGAATTTTCTGACAATTCAAAAAACATAAAATAGAG
GCACACTGTTGTTGGCATCATTCCAACCATTTATTTACTCAGGTAACTTT
AGGCTTCGGCAAATCCTAGCTCAGAGAGCTTGAGATGAGCCTCAGCATAA
TCAGTGAAGAAAGCGTCCTCATCCGCAGCATATTTCTCAACAAGAGGGCG
GAAAACAGGGTCATCCAGAAGGGCCTTGTCAGATGGCAATTGCAAAAGAC
CATCCTTCTCACCAGTCAAGAGCTCCCTCTCCTTGTGGCACCTTCCCAGG
GTGTGGCCACCAGAGAGAGCAACAATATCCTTGTCGCTGAGGCCCATCTG
AGCACCGAAGACTTGCCTCAAGTGATCATTACCCTGTTTAGCATCAGGAA
GCCGGCCTTCTTGAGGTGGCTCAGCCTTGTCATCTCTTCCAGGGTGGAAG
GGGATATCGGGCCCACCGGTAACCTCAACGCCAACAACACCAGCAAGCTG
ATAAAGGTCAACGTACGAGATGGTAGGGAACTGCTCCTTGAACGGCTCCC
AAAGCCTAACGGCAATATCGAGGCCGTTGTTGGCTGAGTGTGCCTGCTCA
ACAGCGAGCCTCATGGTTCCGAACGGACCTCCGGTCTT
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