CF835472

Overview
NameCF835472
Unique NameCF835472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835472_ssr693 microsatellite CF835472_ssr693:693..704. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:377..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_DICDI (40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.076e-73
Identity = 129/170 (75.88%), Postives = 150/170 (88.24%), Query Frame = -1
Query:  256 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPK 765
            MKI+PVQKQ RAGQRTRFKAFVVVGD +GHVGLGVKC+KEVATAI GAI+ AKLSVIPVRRGYWGNK+G PHTVP KVTGKCGSV VR+VPAPRG GIVAARVPKK+LQ+AG+DDV+TSSRG T+T+GNFV ATF  + KT+ +LTPD WRE + +K+PYQE++  L+ K
Sbjct:   94 MKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFFAITKTFAYLTPDLWREVKLIKTPYQEHSAKLSEK 263          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.886e-72
Identity = 127/172 (73.84%), Postives = 148/172 (86.05%), Query Frame = -1
Query:  253 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLT-PKP 765
            +KIMPVQKQ RAGQRTRFKAFV +GD +GH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSV+VR++PAPRG GIV+A VPKK+L  AGI+D +TS+RGST TLGNF KAT+  + KTY +LTPD W+E     +PYQ Y+D L+ P P
Sbjct:   90 LKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFLSKPTP 261          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_CRIGR (40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.091e-69
Identity = 121/155 (78.06%), Postives = 138/155 (89.03%), Query Frame = -1
Query:  301 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRF 765
            +KIMPVQKQ RAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L  AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F
Sbjct:   47 LKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVF 201          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.342e-67
Identity = 119/167 (71.26%), Postives = 141/167 (84.43%), Query Frame = -1
Query:  265 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 765
            MK++PVQKQ RAGQRTRFKAFVV+GD+DGHVGLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVR+VPAPRGAG+VAA V K+ LQ AGI+D +T SRGSTKTLGNFVKA F     TYG LTP+ W E  F ++P +EY D+L
Sbjct:   80 MKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEYADIL 246          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_CAEEL (40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.659e-66
Identity = 118/167 (70.66%), Postives = 138/167 (82.63%), Query Frame = -1
Query:  265 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 765
            +KI PVQKQ  AGQRTRFKAFV +GD  GHVGLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VR++PAPRG GIV+A VPKK+L  AGI+D +T+++GST TLGNF KAT+  L +TY +LTPD W+E    KSPYQ + + L
Sbjct:  103 LKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPYQRHHEYL 269          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_LEIAM (40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.113e-62
Identity = 112/167 (67.07%), Postives = 134/167 (80.24%), Query Frame = -1
Query:  265 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 765
            MKI PVQK   AGQRTRFKAF VVGD DGH+G+G +  KEV+ AIR ++I AKL+++PVRRGYWGNKIG PHT+P KVTGKCGSV VR+VPAPRG GIVAA VPKK+L+FAG++DV+TSSRG T+T GN + ATF  L KTYGFLTPD W +T   + P  E+ +LL
Sbjct:   93 MKIYPVQKATSAGQRTRFKAFNVVGDCDGHIGIGARVGKEVSLAIRASMIAAKLNIVPVRRGYWGNKIGEPHTIPMKVTGKCGSVAVRLVPAPRGTGIVAAPVPKKILEFAGVEDVYTSSRGKTRTHGNLIMATFYALRKTYGFLTPDLWADTEPSRDPTDEHGELL 259          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_YEAST (40S ribosomal protein S2 OS=Saccharomyces cerevisiae GN=RPS2 PE=1 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 1.191e-56
Identity = 105/165 (63.64%), Postives = 128/165 (77.58%), Query Frame = -1
Query:  271 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTD 765
            M I PVQKQ RAGQRTRFKA VVVGD++GHVGLG+K +KEVA AIR  II+AKLSVIP+RRGYWG  +G+PH++  K TGKCGSVTVR++PAPRG+GIVA+   KK+LQ AG++DV+T S G T+TL N +KA F  +  TYGFLTP+ W E     SP   Y+D
Sbjct:   81 MNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLWAEQPLPVSPLDIYSD 245          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_THEPD (30S ribosomal protein S5P OS=Thermofilum pendens (strain Hrk 5) GN=rps5p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.491e-32
Identity = 68/147 (46.26%), Postives = 99/147 (67.35%), Query Frame = -1
Query:  316 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 750
            VQ+Q  +G+ ++++  V VG+ DG+VG+G+  S+++  AI  A   AKL+++PVRRG   W    G PH++P KV GK GSV + ++PAP+G G+VA+ V K VL+ AGI DV++ S G T+T  N  KA +E L KTY F +PD W
Sbjct:   56 VQRQTDSGEVSQYQVTVAVGNEDGYVGVGMGKSRQIGIAIEKATRRAKLNIVPVRRGCGSWECLCGEPHSIPFKVEGKAGSVKIELIPAPKGVGLVASDVAKTVLRLAGIKDVWSRSYGETRTTHNMAKAVYEALKKTYQFYSPDQW 202          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.491e-32
Identity = 77/151 (50.99%), Postives = 98/151 (64.90%), Query Frame = -1
Query:  304 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 750
            VQK   AG+ TRF+A VVVG+ DG+VGLG   +++   AI  AI  AKL++IPVRRG   W    G  H+VP  V GK GSV V + PAP+G G+VA  V K VL+ AGI DV+T ++G T+T  NF +AT+  L  TY F+TP  W E R
Sbjct:   65 VQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGISDVWTFTKGETRTSYNFARATYLALRNTYRFVTPADWAEAR 215          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.559e-32
Identity = 75/147 (51.02%), Postives = 96/147 (65.31%), Query Frame = -1
Query:  316 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 750
            VQK   AG+ TR +  VV+G+ DG VGLG+  +K++  AI+ A+  AKL++ PVRRG   W    G PH+VP  V GK GSV V + PAPRG G+VA  V K VL++AGI DV+T + G T+T  NF KATF  L +TY FL P  W
Sbjct:   61 VQKVTDAGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNITPVRRGCGSWECTCGEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDVAKAVLRYAGIKDVWTHTEGETRTTHNFAKATFNALKQTYKFLAPWDW 207          
The following BLAST results are available for this feature:
BLAST of CF835472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
RS2_DICDI4.076e-7375.8840S ribosomal protein S2 OS=Dictyostelium discoide... [more]
RS2_DROME5.886e-7273.8440S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_CRIGR6.091e-6978.0640S ribosomal protein S2 (Fragment) OS=Cricetulus ... [more]
RS2_SCHPO3.342e-6771.2640S ribosomal protein S2 OS=Schizosaccharomyces po... [more]
RS2_CAEEL1.659e-6670.6640S ribosomal protein S2 OS=Caenorhabditis elegans... [more]
RS2_LEIAM1.113e-6267.0740S ribosomal protein S2 OS=Leishmania amazonensis... [more]
RS2_YEAST1.191e-5663.6440S ribosomal protein S2 OS=Saccharomyces cerevisi... [more]
RS5_THEPD3.491e-3246.2630S ribosomal protein S5P OS=Thermofilum pendens (... [more]
RS5_AERPE3.491e-3250.9930S ribosomal protein S5P OS=Aeropyrum pernix GN=r... [more]
RS5_IGNH44.559e-3251.0230S ribosomal protein S5P OS=Ignicoccus hospitalis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01E16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835472 ID=CF835472; Name=CF835472; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTGATAAATAAACATCCATTCAAGAAAACTCTGATTG
CAAAACTTTAAAGCAAACAATTGTGTCCCCAAATAGCAACATACTAGTCC
TGCAGAAATGAAAAACAGAAAAGTCTGTAACAAACAAAGCTATACTATAA
AGTCAACCAAAATGCCTTTCATTCTAATGCTCTCCTCTCCATGCAGCCTT
AAGTAGCTTAAGGTTCAACTTGATCAACTTCTGTGATGACTGCCTTGCTG
ATGGGCTTTGGCGTCAAAAGATCTGTGTACTCTTGGTATGGAGATTTCAC
AAAACGAGTCTCCCTCCAGAAATCAGGTGTAAGGAAGCCATATGTCTTCA
ACAAACACTCAAAGGTTGCCTTGACAAAGTTTCCAAGAGTCTTGGTCGAC
CCACGAGAAGATGTGAAAACATCGTCAATACCAGCAAACTGCAGCACCTT
CTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGGCCGGAACCA
TCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACACGGCACGGTG
TGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCACCGGAATCAC
CGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGGCAACCTCTT
TGGAGCACTTAACGCCAAGACCCACGTGGCCGTCCGTGTCACCGACGACG
ACGAAGGCCTTGAACCTCGTCCTCTGACCGGCACGTGGCTGTTTCTGCAC
CGGCATGATCTTCAT
back to top