CF835472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_DICDI (40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1 SV=1) HSP 1 Score: 274.633 bits (701), Expect = 4.076e-73 Identity = 129/170 (75.88%), Postives = 150/170 (88.24%), Query Frame = -1 Query: 256 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLTPK 765 MKI+PVQKQ RAGQRTRFKAFVVVGD +GHVGLGVKC+KEVATAI GAI+ AKLSVIPVRRGYWGNK+G PHTVP KVTGKCGSV VR+VPAPRG GIVAARVPKK+LQ+AG+DDV+TSSRG T+T+GNFV ATF + KT+ +LTPD WRE + +K+PYQE++ L+ K Sbjct: 94 MKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFFAITKTFAYLTPDLWREVKLIKTPYQEHSAKLSEK 263
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2) HSP 1 Score: 270.781 bits (691), Expect = 5.886e-72 Identity = 127/172 (73.84%), Postives = 148/172 (86.05%), Query Frame = -1 Query: 253 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLLT-PKP 765 +KIMPVQKQ RAGQRTRFKAFV +GD +GH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSV+VR++PAPRG GIV+A VPKK+L AGI+D +TS+RGST TLGNF KAT+ + KTY +LTPD W+E +PYQ Y+D L+ P P Sbjct: 90 LKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFLSKPTP 261
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_CRIGR (40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2 PE=2 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 6.091e-69 Identity = 121/155 (78.06%), Postives = 138/155 (89.03%), Query Frame = -1 Query: 301 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRF 765 +KIMPVQKQ RAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L AGIDD +TS+RG T TLGNF KATF+ + KTY +LTPD W+ET F Sbjct: 47 LKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVF 201
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1) HSP 1 Score: 254.988 bits (650), Expect = 3.342e-67 Identity = 119/167 (71.26%), Postives = 141/167 (84.43%), Query Frame = -1 Query: 265 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 765 MK++PVQKQ RAGQRTRFKAFVV+GD+DGHVGLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG +G PHTVP KV+GKCGSVTVR+VPAPRGAG+VAA V K+ LQ AGI+D +T SRGSTKTLGNFVKA F TYG LTP+ W E F ++P +EY D+L Sbjct: 80 MKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEEYADIL 246
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_CAEEL (40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=1 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 1.659e-66 Identity = 118/167 (70.66%), Postives = 138/167 (82.63%), Query Frame = -1 Query: 265 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 765 +KI PVQKQ AGQRTRFKAFV +GD GHVGLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VR++PAPRG GIV+A VPKK+L AGI+D +T+++GST TLGNF KAT+ L +TY +LTPD W+E KSPYQ + + L Sbjct: 103 LKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPYQRHHEYL 269
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_LEIAM (40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.113e-62 Identity = 112/167 (67.07%), Postives = 134/167 (80.24%), Query Frame = -1 Query: 265 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTDLL 765 MKI PVQK AGQRTRFKAF VVGD DGH+G+G + KEV+ AIR ++I AKL+++PVRRGYWGNKIG PHT+P KVTGKCGSV VR+VPAPRG GIVAA VPKK+L+FAG++DV+TSSRG T+T GN + ATF L KTYGFLTPD W +T + P E+ +LL Sbjct: 93 MKIYPVQKATSAGQRTRFKAFNVVGDCDGHIGIGARVGKEVSLAIRASMIAAKLNIVPVRRGYWGNKIGEPHTIPMKVTGKCGSVAVRLVPAPRGTGIVAAPVPKKILEFAGVEDVYTSSRGKTRTHGNLIMATFYALRKTYGFLTPDLWADTEPSRDPTDEHGELL 259
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS2_YEAST (40S ribosomal protein S2 OS=Saccharomyces cerevisiae GN=RPS2 PE=1 SV=3) HSP 1 Score: 219.935 bits (559), Expect = 1.191e-56 Identity = 105/165 (63.64%), Postives = 128/165 (77.58%), Query Frame = -1 Query: 271 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFVKSPYQEYTD 765 M I PVQKQ RAGQRTRFKA VVVGD++GHVGLG+K +KEVA AIR II+AKLSVIP+RRGYWG +G+PH++ K TGKCGSVTVR++PAPRG+GIVA+ KK+LQ AG++DV+T S G T+TL N +KA F + TYGFLTP+ W E SP Y+D Sbjct: 81 MNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLWAEQPLPVSPLDIYSD 245
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_THEPD (30S ribosomal protein S5P OS=Thermofilum pendens (strain Hrk 5) GN=rps5p PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 3.491e-32 Identity = 68/147 (46.26%), Postives = 99/147 (67.35%), Query Frame = -1 Query: 316 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 750 VQ+Q +G+ ++++ V VG+ DG+VG+G+ S+++ AI A AKL+++PVRRG W G PH++P KV GK GSV + ++PAP+G G+VA+ V K VL+ AGI DV++ S G T+T N KA +E L KTY F +PD W Sbjct: 56 VQRQTDSGEVSQYQVTVAVGNEDGYVGVGMGKSRQIGIAIEKATRRAKLNIVPVRRGCGSWECLCGEPHSIPFKVEGKAGSVKIELIPAPKGVGLVASDVAKTVLRLAGIKDVWSRSYGETRTTHNMAKAVYEALKKTYQFYSPDQW 202
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 3.491e-32 Identity = 77/151 (50.99%), Postives = 98/151 (64.90%), Query Frame = -1 Query: 304 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 750 VQK AG+ TRF+A VVVG+ DG+VGLG +++ AI AI AKL++IPVRRG W G H+VP V GK GSV V + PAP+G G+VA V K VL+ AGI DV+T ++G T+T NF +AT+ L TY F+TP W E R Sbjct: 65 VQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGISDVWTFTKGETRTSYNFARATYLALRNTYRFVTPADWAEAR 215
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.559e-32 Identity = 75/147 (51.02%), Postives = 96/147 (65.31%), Query Frame = -1 Query: 316 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 750 VQK AG+ TR + VV+G+ DG VGLG+ +K++ AI+ A+ AKL++ PVRRG W G PH+VP V GK GSV V + PAPRG G+VA V K VL++AGI DV+T + G T+T NF KATF L +TY FL P W Sbjct: 61 VQKVTDAGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNITPVRRGCGSWECTCGEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDVAKAVLRYAGIKDVWTHTEGETRTTHNFAKATFNALKQTYKFLAPWDW 207 The following BLAST results are available for this feature:
BLAST of CF835472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 384
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835472 ID=CF835472; Name=CF835472; organism=Citrus sinensis; type=EST; length=765bpback to top |