CF835472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31 Identity = 71/140 (50.71%), Postives = 96/140 (68.57%), Query Frame = -1 Query: 352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSS-----RGSTKTLGNFVKATFECL 750 VQK ++G+R RF+ VVVG+ DG VG+G ++EV AIR AI AKL++I VRRG W GRPH++P ++TGKCGSV + + PAPRG G+VA +KVL+ AGI+DV+T + +G T+T NF KATF+ L Sbjct: 61 VQKMHKSGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNIIKVRRGCGSWECGCGRPHSIPFEITGKCGSVRITLKPAPRGTGLVAGETAQKVLEMAGIEDVWTKTTGGKGKGETRTTINFAKATFDAL 200
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_SULIN (30S ribosomal protein S5P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps5p PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31 Identity = 67/154 (43.51%), Postives = 100/154 (64.94%), Query Frame = -1 Query: 304 IMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 759 I VQKQ AG+ +R+K V++G+ DG+V +G +K++ AI+ AI AK++++PVRRG W G PH++P KV GK GSV V ++PAP+G G+V V K +L +AGI D +++++G T+T NFV+A + L TY F+T W R Sbjct: 61 IKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNILPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVNLLPAPKGTGLVVGSVLKTLLTYAGIRDAWSTTKGETRTTENFVRAGYSALYNTYNFVTLQDWARKR 214
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.123e-30 Identity = 68/154 (44.16%), Postives = 100/154 (64.94%), Query Frame = -1 Query: 304 IMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 759 I VQKQ AG+ +R+K V++G+ DG+V +G +K++ AI+ AI AK+++IPVRRG W G PH++P KV GK GSV V ++PAP+G G+V V K +L +AGI D +++++G T+T NFV+A + L TY F+T W R Sbjct: 61 IKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETRTTENFVRAGYSALYNTYKFVTLQDWVRKR 214
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_HYPBU (30S ribosomal protein S5P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps5p PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.467e-30 Identity = 73/150 (48.67%), Postives = 97/150 (64.67%), Query Frame = -1 Query: 307 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 750 VQK AG+ RF+ VV+G+ +G VG+G ++++A AI AI AKL++IPVRRG W PH+VP V GK GSV V + PAPRG G+VA K VL+ AGI DV++ ++G T+T NFVKAT+ L +TY F+TP W T Sbjct: 64 VQKMTDAGRINRFRVVVVIGNENGFVGVGQGKARQLAVAIEKAIRNAKLNIIPVRRGCGSWECLCSEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDAAKVVLRLAGIRDVWSFTKGDTRTTINFVKATYNALKQTYKFVTPLDWART 213
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METS5 (30S ribosomal protein S5P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps5p PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.915e-30 Identity = 72/151 (47.68%), Postives = 97/151 (64.24%), Query Frame = -1 Query: 304 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 750 VQKQ AG+ +R+K VV+G+ DG+V +GV SK++ AI+ AI AK+ VIPVRRG W G H++P V+GK GS V + PAP+G G+VA V K +L +AGI DV++ SRG T+T NF+ A + L TY F+TP W R Sbjct: 64 VQKQTDAGELSRYKVLVVMGNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPVRRGCGSWECTCGESHSLPFLVSGKSGSAEVVLRPAPKGTGLVAGGVLKTLLTYAGIKDVWSFSRGETRTTDNFIMAGYRALYNTYKFVTPVDWARRR 214
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_PYRCJ (30S ribosomal protein S5P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps5p PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 4.267e-30 Identity = 70/141 (49.65%), Postives = 92/141 (65.25%), Query Frame = -1 Query: 334 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGF 750 VQ+Q AG+R +F+A V VG+ DG+VG+G+ S++V AI A AKL++ PVRRG W PH+VP V+GK GSV V ++PAP+G G+VA V K VL+ AGI DV+T +RG T+T NF A F L TY F Sbjct: 60 VQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKSRQVRQAIEKATREAKLNITPVRRGCGSWKCSCDEPHSVPFVVSGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTKTRGDTRTTLNFALAVFNALRNTYYF 200
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 9.506e-30 Identity = 70/147 (47.62%), Postives = 92/147 (62.59%), Query Frame = -1 Query: 316 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 750 VQK AG+R+RF+ VVVG+ DG VG+G +++ A+R A+ AKL++ PVRRG W + G PH++P V GK GSV V + PAP+G G+VA K VL+ AGI DV+T + G TKT NF KA L TY F+ P W Sbjct: 65 VQKVTDAGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAPKGTGLVAGDTAKAVLRMAGIKDVWTETFGKTKTTLNFAKAVVNALRNTYKFVAPVDW 211
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 9.506e-30 Identity = 69/146 (47.26%), Postives = 94/146 (64.38%), Query Frame = -1 Query: 334 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGF 765 + I VQ+Q AG+R++F+ V VG+ DG+VG+G+ +K+V AI A+ AKL++ PVRRG W PH+VP V GK GSV V ++PAP+G G+VA V K VL+ AGI DV+T +RG T+T NF A + L TY F Sbjct: 55 LNINVVQRQTHAGERSQFQVVVAVGNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTQTRGDTRTTLNFAMAVYNALRNTYYF 200
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_SULTO (30S ribosomal protein S5P OS=Sulfolobus tokodaii GN=rps5p PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29 Identity = 68/152 (44.74%), Postives = 97/152 (63.82%), Query Frame = -1 Query: 316 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 765 M I VQKQ AG+ +++K +V+G+ DG+V G +K++ AI+ AI AK+++IPVRRG W G H++P KV GK GSV V ++PAP+G G+V K +L +AGI D ++ +RGST T NF+KA + L TY F+TP W Sbjct: 59 MDIKIVQKQTDAGEISKYKVLIVMGNMDGYVSYGTGKAKQLRVAIQKAIKNAKMNIIPVRRGCGSWECTCGEAHSLPFKVYGKAGSVEVLLMPAPKGTGLVVGPALKTLLTYAGIKDAWSLTRGSTYTTENFIKAGYNALYNTYKFVTPVDW 210
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_PYRAR (30S ribosomal protein S5P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps5p PE=3 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29 Identity = 68/141 (48.23%), Postives = 93/141 (65.96%), Query Frame = -1 Query: 334 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGF 750 VQ+Q AG+R+ F+A V VG+ DG+VG+G+ +++V AI A+ AKL++IPVRRG W PH+VP V GK GSV V ++PAP+G G+VA V K VL+ AG+ DV+T +RG T+T NF A + L TY F Sbjct: 60 VQRQTHAGERSLFQAVVAVGNEDGYVGVGIGKARQVRQAIEKAVREAKLNLIPVRRGCGSWKCSCDEPHSVPFVVKGKSGSVEVTLIPAPKGVGLVAGDVAKAVLRLAGVKDVWTHTRGDTRTTLNFALAVYNALRNTYYF 200 The following BLAST results are available for this feature:
BLAST of CF835472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 384
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835472 ID=CF835472; Name=CF835472; organism=Citrus sinensis; type=EST; length=765bpback to top |