CF835472

Overview
NameCF835472
Unique NameCF835472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.263e-31
Identity = 71/140 (50.71%), Postives = 96/140 (68.57%), Query Frame = -1
Query:  352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSS-----RGSTKTLGNFVKATFECL 750
            VQK  ++G+R RF+  VVVG+ DG VG+G   ++EV  AIR AI  AKL++I VRRG   W    GRPH++P ++TGKCGSV + + PAPRG G+VA    +KVL+ AGI+DV+T +     +G T+T  NF KATF+ L
Sbjct:   61 VQKMHKSGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNIIKVRRGCGSWECGCGRPHSIPFEITGKCGSVRITLKPAPRGTGLVAGETAQKVLEMAGIEDVWTKTTGGKGKGETRTTINFAKATFDAL 200          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_SULIN (30S ribosomal protein S5P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps5p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.041e-31
Identity = 67/154 (43.51%), Postives = 100/154 (64.94%), Query Frame = -1
Query:  304 IMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 759
            I  VQKQ  AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK++++PVRRG   W    G PH++P KV GK GSV V ++PAP+G G+V   V K +L +AGI D +++++G T+T  NFV+A +  L  TY F+T   W   R
Sbjct:   61 IKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNILPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVNLLPAPKGTGLVVGSVLKTLLTYAGIRDAWSTTKGETRTTENFVRAGYSALYNTYNFVTLQDWARKR 214          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.123e-30
Identity = 68/154 (44.16%), Postives = 100/154 (64.94%), Query Frame = -1
Query:  304 IMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 759
            I  VQKQ  AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK+++IPVRRG   W    G PH++P KV GK GSV V ++PAP+G G+V   V K +L +AGI D +++++G T+T  NFV+A +  L  TY F+T   W   R
Sbjct:   61 IKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETRTTENFVRAGYSALYNTYKFVTLQDWVRKR 214          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_HYPBU (30S ribosomal protein S5P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps5p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.467e-30
Identity = 73/150 (48.67%), Postives = 97/150 (64.67%), Query Frame = -1
Query:  307 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRET 750
            VQK   AG+  RF+  VV+G+ +G VG+G   ++++A AI  AI  AKL++IPVRRG   W      PH+VP  V GK GSV V + PAPRG G+VA    K VL+ AGI DV++ ++G T+T  NFVKAT+  L +TY F+TP  W  T
Sbjct:   64 VQKMTDAGRINRFRVVVVIGNENGFVGVGQGKARQLAVAIEKAIRNAKLNIIPVRRGCGSWECLCSEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDAAKVVLRLAGIRDVWSFTKGDTRTTINFVKATYNALKQTYKFVTPLDWART 213          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METS5 (30S ribosomal protein S5P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps5p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.915e-30
Identity = 72/151 (47.68%), Postives = 97/151 (64.24%), Query Frame = -1
Query:  304 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 750
            VQKQ  AG+ +R+K  VV+G+ DG+V +GV  SK++  AI+ AI  AK+ VIPVRRG   W    G  H++P  V+GK GS  V + PAP+G G+VA  V K +L +AGI DV++ SRG T+T  NF+ A +  L  TY F+TP  W   R
Sbjct:   64 VQKQTDAGELSRYKVLVVMGNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPVRRGCGSWECTCGESHSLPFLVSGKSGSAEVVLRPAPKGTGLVAGGVLKTLLTYAGIKDVWSFSRGETRTTDNFIMAGYRALYNTYKFVTPVDWARRR 214          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_PYRCJ (30S ribosomal protein S5P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.267e-30
Identity = 70/141 (49.65%), Postives = 92/141 (65.25%), Query Frame = -1
Query:  334 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGF 750
            VQ+Q  AG+R +F+A V VG+ DG+VG+G+  S++V  AI  A   AKL++ PVRRG   W      PH+VP  V+GK GSV V ++PAP+G G+VA  V K VL+ AGI DV+T +RG T+T  NF  A F  L  TY F
Sbjct:   60 VQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKSRQVRQAIEKATREAKLNITPVRRGCGSWKCSCDEPHSVPFVVSGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTKTRGDTRTTLNFALAVFNALRNTYYF 200          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.506e-30
Identity = 70/147 (47.62%), Postives = 92/147 (62.59%), Query Frame = -1
Query:  316 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 750
            VQK   AG+R+RF+  VVVG+ DG VG+G   +++   A+R A+  AKL++ PVRRG   W  + G PH++P  V GK GSV V + PAP+G G+VA    K VL+ AGI DV+T + G TKT  NF KA    L  TY F+ P  W
Sbjct:   65 VQKVTDAGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAPKGTGLVAGDTAKAVLRMAGIKDVWTETFGKTKTTLNFAKAVVNALRNTYKFVAPVDW 211          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.506e-30
Identity = 69/146 (47.26%), Postives = 94/146 (64.38%), Query Frame = -1
Query:  334 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGF 765
            + I  VQ+Q  AG+R++F+  V VG+ DG+VG+G+  +K+V  AI  A+  AKL++ PVRRG   W      PH+VP  V GK GSV V ++PAP+G G+VA  V K VL+ AGI DV+T +RG T+T  NF  A +  L  TY F
Sbjct:   55 LNINVVQRQTHAGERSQFQVVVAVGNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTQTRGDTRTTLNFAMAVYNALRNTYYF 200          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_SULTO (30S ribosomal protein S5P OS=Sulfolobus tokodaii GN=rps5p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29
Identity = 68/152 (44.74%), Postives = 97/152 (63.82%), Query Frame = -1
Query:  316 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 765
            M I  VQKQ  AG+ +++K  +V+G+ DG+V  G   +K++  AI+ AI  AK+++IPVRRG   W    G  H++P KV GK GSV V ++PAP+G G+V     K +L +AGI D ++ +RGST T  NF+KA +  L  TY F+TP  W
Sbjct:   59 MDIKIVQKQTDAGEISKYKVLIVMGNMDGYVSYGTGKAKQLRVAIQKAIKNAKMNIIPVRRGCGSWECTCGEAHSLPFKVYGKAGSVEVLLMPAPKGTGLVVGPALKTLLTYAGIKDAWSLTRGSTYTTENFIKAGYNALYNTYKFVTPVDW 210          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_PYRAR (30S ribosomal protein S5P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps5p PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29
Identity = 68/141 (48.23%), Postives = 93/141 (65.96%), Query Frame = -1
Query:  334 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGF 750
            VQ+Q  AG+R+ F+A V VG+ DG+VG+G+  +++V  AI  A+  AKL++IPVRRG   W      PH+VP  V GK GSV V ++PAP+G G+VA  V K VL+ AG+ DV+T +RG T+T  NF  A +  L  TY F
Sbjct:   60 VQRQTHAGERSLFQAVVAVGNEDGYVGVGIGKARQVRQAIEKAVREAKLNLIPVRRGCGSWKCSCDEPHSVPFVVKGKSGSVEVTLIPAPKGVGLVAGDVAKAVLRLAGVKDVWTHTRGDTRTTLNFALAVYNALRNTYYF 200          
The following BLAST results are available for this feature:
BLAST of CF835472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
RS5_METKA2.263e-3150.7130S ribosomal protein S5P OS=Methanopyrus kandleri... [more]
RS5_SULIN5.041e-3143.5130S ribosomal protein S5P OS=Sulfolobus islandicus... [more]
RS5_SULSO1.123e-3044.1630S ribosomal protein S5P OS=Sulfolobus solfataric... [more]
RS5_HYPBU1.467e-3048.6730S ribosomal protein S5P OS=Hyperthermus butylicu... [more]
RS5_METS51.915e-3047.6830S ribosomal protein S5P OS=Metallosphaera sedula... [more]
RS5_PYRCJ4.267e-3049.6530S ribosomal protein S5P OS=Pyrobaculum calidifon... [more]
RS5_STAMF9.506e-3047.6230S ribosomal protein S5P OS=Staphylothermus marin... [more]
RS5_PYRIL9.506e-3047.2630S ribosomal protein S5P OS=Pyrobaculum islandicu... [more]
RS5_SULTO1.242e-2944.7430S ribosomal protein S5P OS=Sulfolobus tokodaii G... [more]
RS5_PYRAR1.242e-2948.2330S ribosomal protein S5P OS=Pyrobaculum arsenatic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835472 ID=CF835472; Name=CF835472; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTGATAAATAAACATCCATTCAAGAAAACTCTGATTG
CAAAACTTTAAAGCAAACAATTGTGTCCCCAAATAGCAACATACTAGTCC
TGCAGAAATGAAAAACAGAAAAGTCTGTAACAAACAAAGCTATACTATAA
AGTCAACCAAAATGCCTTTCATTCTAATGCTCTCCTCTCCATGCAGCCTT
AAGTAGCTTAAGGTTCAACTTGATCAACTTCTGTGATGACTGCCTTGCTG
ATGGGCTTTGGCGTCAAAAGATCTGTGTACTCTTGGTATGGAGATTTCAC
AAAACGAGTCTCCCTCCAGAAATCAGGTGTAAGGAAGCCATATGTCTTCA
ACAAACACTCAAAGGTTGCCTTGACAAAGTTTCCAAGAGTCTTGGTCGAC
CCACGAGAAGATGTGAAAACATCGTCAATACCAGCAAACTGCAGCACCTT
CTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGGCCGGAACCA
TCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACACGGCACGGTG
TGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCACCGGAATCAC
CGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGGCAACCTCTT
TGGAGCACTTAACGCCAAGACCCACGTGGCCGTCCGTGTCACCGACGACG
ACGAAGGCCTTGAACCTCGTCCTCTGACCGGCACGTGGCTGTTTCTGCAC
CGGCATGATCTTCAT
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