CF835472

Overview
NameCF835472
Unique NameCF835472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835472_ssr693 microsatellite CF835472_ssr693:693..704. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:377..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_PYRAE (30S ribosomal protein S5P OS=Pyrobaculum aerophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.621e-29
Identity = 67/141 (47.52%), Postives = 92/141 (65.25%), Query Frame = -1
Query:  334 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGF 750
            VQ+Q  AG+R +F+A V VG+ DG+VG+G+  +++V  AI  A   AKL+++PVRRG   W      PH+VP  V GK GSV + ++PAP+G G+VA  V K VL+ AGI DV+T +RG T+T  NF  A +  L  TY F
Sbjct:   76 VQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKARQVRQAIEKATREAKLNLVPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEITLIPAPKGVGLVAGDVAKAVLRLAGIKDVWTKTRGDTRTTLNFAMAVYNALRNTYYF 216          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METVS (30S ribosomal protein S5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps5p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.718e-29
Identity = 67/135 (49.63%), Postives = 91/135 (67.41%), Query Frame = -1
Query:  352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 750
            VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AG+ D +T++ G T+T  NF +ATF+ L
Sbjct:   67 VQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTTTYGDTRTTYNFAEATFDAL 201          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METVA (30S ribosomal protein S5P OS=Methanococcus vannielii GN=rps5p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.718e-29
Identity = 67/135 (49.63%), Postives = 91/135 (67.41%), Query Frame = -1
Query:  352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 750
            VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AG+ D +T++ G T+T  NF +ATF+ L
Sbjct:   67 VQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTTTYGDTRTTYNFAEATFDAL 201          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.718e-29
Identity = 65/135 (48.15%), Postives = 91/135 (67.41%), Query Frame = -1
Query:  352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 750
            VQ+  ++G++  F+  V VG+ DG+VGLG   ++EV  AIR A+  AK ++I VRRG   WG   GR HTVP KV+GK GSV V ++PAP G G+    V K +++ AGIDDV++ +RG T+T  NF +ATF+ L
Sbjct:   61 VQRMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGDVGKTIMRLAGIDDVWSHTRGQTQTTVNFARATFDAL 195          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METM6 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps5p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.047e-29
Identity = 68/135 (50.37%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 750
            VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AGI D +T + G T+T  NF +ATF+ L
Sbjct:   71 VQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDAWTKTFGDTRTTYNFAEATFDAL 205          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METMP (30S ribosomal protein S5P OS=Methanococcus maripaludis GN=rps5p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.051e-28
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 750
            VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AG+ D +T + G T+T  NF +ATF+ L
Sbjct:   67 VQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTKTFGDTRTTYNFAEATFDAL 201          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METM7 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps5p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.051e-28
Identity = 68/135 (50.37%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 750
            VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL  AGI D +T + G T+T  NF +ATF+ L
Sbjct:   71 VQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRIGCGSWECGCGYPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDAWTKTFGDTRTTYNFAEATFDAL 205          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.373e-28
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = -1
Query:  352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 750
            VQ+  ++G+R RF+A VVVG+ +G+VG+G   +KEV  AIR AI  AK ++I V+RG   W    G PH++P K  GKCGS  + ++PAP+G G+VA  V K VL  AGI DV+T + G T+T  NF  ATFE L
Sbjct:   59 VQRMHKSGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYKGYGKCGSTAIEILPAPKGVGLVAGDVAKAVLGLAGIKDVWTKTFGETRTTYNFAMATFEAL 193          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.793e-28
Identity = 65/147 (44.22%), Postives = 94/147 (63.95%), Query Frame = -1
Query:  316 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFW 750
            VQKQ  AG+ +R+K  +V+G+ DG++  G   +K++  AI+ AI  AK+ +IPVRRG   W    G  H++P  V+GK GSV V ++PAP+G G+V   V K  L  AG+ DV++ ++GST T  NF+KA +  L  TY F+TP  W
Sbjct:   64 VQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVVGSVLKTFLSLAGLKDVWSRTKGSTYTHENFIKAAYIALYNTYRFVTPVDW 210          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.793e-28
Identity = 71/158 (44.94%), Postives = 93/158 (58.86%), Query Frame = -1
Query:  298 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETRFV 765
            + I  VQ+   +G+R +F+  V +G+ DG+VG       +V  AI+ AI +AKL++I V RG   W    GRPHTV  K TGK GSV V ++PAPRG G+      + VL+ AGIDDV+T S G T+T  NF KATF  L +T     P   RE R V
Sbjct:   53 LDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWECGCGRPHTVALKSTGKAGSVDVELMPAPRGLGLAGGETVQHVLELAGIDDVWTRSSGKTRTTVNFAKATFNALRETSEARVPQHAREEREV 210          
The following BLAST results are available for this feature:
BLAST of CF835472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
RS5_PYRAE1.621e-2947.5230S ribosomal protein S5P OS=Pyrobaculum aerophilu... [more]
RS5_METVS4.718e-2949.6330S ribosomal protein S5P OS=Methanococcus vanniel... [more]
RS5_METVA4.718e-2949.6330S ribosomal protein S5P OS=Methanococcus vanniel... [more]
RS5_METTH4.718e-2948.1530S ribosomal protein S5P OS=Methanobacterium ther... [more]
RS5_METM68.047e-2950.3730S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METMP1.051e-2849.6330S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METM71.051e-2850.3730S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METJA1.373e-2849.6330S ribosomal protein S5P OS=Methanocaldococcus ja... [more]
RS5_SULAC1.793e-2844.2230S ribosomal protein S5P OS=Sulfolobus acidocalda... [more]
RS5_HALSA1.793e-2844.9430S ribosomal protein S5P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835472 ID=CF835472; Name=CF835472; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTGATAAATAAACATCCATTCAAGAAAACTCTGATTG
CAAAACTTTAAAGCAAACAATTGTGTCCCCAAATAGCAACATACTAGTCC
TGCAGAAATGAAAAACAGAAAAGTCTGTAACAAACAAAGCTATACTATAA
AGTCAACCAAAATGCCTTTCATTCTAATGCTCTCCTCTCCATGCAGCCTT
AAGTAGCTTAAGGTTCAACTTGATCAACTTCTGTGATGACTGCCTTGCTG
ATGGGCTTTGGCGTCAAAAGATCTGTGTACTCTTGGTATGGAGATTTCAC
AAAACGAGTCTCCCTCCAGAAATCAGGTGTAAGGAAGCCATATGTCTTCA
ACAAACACTCAAAGGTTGCCTTGACAAAGTTTCCAAGAGTCTTGGTCGAC
CCACGAGAAGATGTGAAAACATCGTCAATACCAGCAAACTGCAGCACCTT
CTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGGCCGGAACCA
TCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACACGGCACGGTG
TGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCACCGGAATCAC
CGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGGCAACCTCTT
TGGAGCACTTAACGCCAAGACCCACGTGGCCGTCCGTGTCACCGACGACG
ACGAAGGCCTTGAACCTCGTCCTCTGACCGGCACGTGGCTGTTTCTGCAC
CGGCATGATCTTCAT
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