CF835472

Overview
NameCF835472
Unique NameCF835472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835472_ssr693 microsatellite CF835472_ssr693:693..704. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:377..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_CAUCR (30S ribosomal protein S5 OS=Caulobacter crescentus GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = -1
Query:  352 RAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 735
            + G+R  F A +VVGD  G VG G   ++EV  AIR A   AK ++I V        +    T+     G+ G+  V M  AP G G++A    + VL+  G+ DV   S GS+    N V+ATFE L
Sbjct:   46 KGGRRFSFAALMVVGDQKGRVGFGHGKAREVPEAIRKATEEAKKTMIRV-------PLRESRTLHHDGAGRWGAGKVMMRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGSSNPY-NMVRATFEAL 165          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_CAUCN (30S ribosomal protein S5 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = -1
Query:  352 RAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 735
            + G+R  F A +VVGD  G VG G   ++EV  AIR A   AK ++I V        +    T+     G+ G+  V M  AP G G++A    + VL+  G+ DV   S GS+    N V+ATFE L
Sbjct:   46 KGGRRFSFAALMVVGDQKGRVGFGHGKAREVPEAIRKATEEAKKTMIRV-------PLRESRTLHHDGAGRWGAGKVMMRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGSSNPY-NMVRATFEAL 165          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RR5_THAPS (30S ribosomal protein S5, chloroplastic OS=Thalassiosira pseudonana GN=rps5 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 41/129 (31.78%), Postives = 68/129 (52.71%), Query Frame = -1
Query:  379 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 765
            +KI  V K  + G++  F+A VV+GD +G VG+GV  +++V  A + A    + ++I V        I +  ++P  V G  G+  + M P+  G+G++A    + VL+ AGI +V     GS   L N
Sbjct:   31 IKISRVTKVTKGGKKLSFRAVVVIGDENGKVGVGVGKAEDVVNAFKKAKTDGRKNLIDV-------PITKSLSIPHAVIGDLGACKIIMRPSIEGSGVIAGGAVRTVLEVAGIKNVIAKQLGSDNLLNN 152          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RR5_PHATR (30S ribosomal protein S5, chloroplastic OS=Phaeodactylum tricornutum GN=rps5 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 41/129 (31.78%), Postives = 67/129 (51.94%), Query Frame = -1
Query:  379 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 765
            +KI  V K  + G++  F+A VVVGD +G VG+GV  + +V  A + A    + ++I +        I +  ++P  V G  G+  V M P+  G+G++A    + VL+ AG+ +V     GS   L N
Sbjct:   31 IKISRVSKVTKGGKKLSFRAIVVVGDENGKVGVGVAKADDVVNAFKKAKTDGRKNLIEL-------PITKALSIPHNVAGNFGACKVIMRPSIEGSGVIAGGAVRIVLEVAGVKNVIAKQLGSNNLLNN 152          
The following BLAST results are available for this feature:
BLAST of CF835472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
RS5_CAUCR9.883e-1136.7230S ribosomal protein S5 OS=Caulobacter crescentus... [more]
RS5_CAUCN9.883e-1136.7230S ribosomal protein S5 OS=Caulobacter crescentus... [more]
RR5_THAPS9.883e-1131.7830S ribosomal protein S5, chloroplastic OS=Thalass... [more]
RR5_PHATR9.883e-1131.7830S ribosomal protein S5, chloroplastic OS=Phaeoda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835472 ID=CF835472; Name=CF835472; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTGATAAATAAACATCCATTCAAGAAAACTCTGATTG
CAAAACTTTAAAGCAAACAATTGTGTCCCCAAATAGCAACATACTAGTCC
TGCAGAAATGAAAAACAGAAAAGTCTGTAACAAACAAAGCTATACTATAA
AGTCAACCAAAATGCCTTTCATTCTAATGCTCTCCTCTCCATGCAGCCTT
AAGTAGCTTAAGGTTCAACTTGATCAACTTCTGTGATGACTGCCTTGCTG
ATGGGCTTTGGCGTCAAAAGATCTGTGTACTCTTGGTATGGAGATTTCAC
AAAACGAGTCTCCCTCCAGAAATCAGGTGTAAGGAAGCCATATGTCTTCA
ACAAACACTCAAAGGTTGCCTTGACAAAGTTTCCAAGAGTCTTGGTCGAC
CCACGAGAAGATGTGAAAACATCGTCAATACCAGCAAACTGCAGCACCTT
CTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGGCCGGAACCA
TCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACACGGCACGGTG
TGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCACCGGAATCAC
CGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGGCAACCTCTT
TGGAGCACTTAACGCCAAGACCCACGTGGCCGTCCGTGTCACCGACGACG
ACGAAGGCCTTGAACCTCGTCCTCTGACCGGCACGTGGCTGTTTCTGCAC
CGGCATGATCTTCAT
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