CF835472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_CAUCR (30S ribosomal protein S5 OS=Caulobacter crescentus GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11 Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = -1 Query: 352 RAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 735 + G+R F A +VVGD G VG G ++EV AIR A AK ++I V + T+ G+ G+ V M AP G G++A + VL+ G+ DV S GS+ N V+ATFE L Sbjct: 46 KGGRRFSFAALMVVGDQKGRVGFGHGKAREVPEAIRKATEEAKKTMIRV-------PLRESRTLHHDGAGRWGAGKVMMRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGSSNPY-NMVRATFEAL 165
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_CAUCN (30S ribosomal protein S5 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11 Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = -1 Query: 352 RAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 735 + G+R F A +VVGD G VG G ++EV AIR A AK ++I V + T+ G+ G+ V M AP G G++A + VL+ G+ DV S GS+ N V+ATFE L Sbjct: 46 KGGRRFSFAALMVVGDQKGRVGFGHGKAREVPEAIRKATEEAKKTMIRV-------PLRESRTLHHDGAGRWGAGKVMMRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGSSNPY-NMVRATFEAL 165
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RR5_THAPS (30S ribosomal protein S5, chloroplastic OS=Thalassiosira pseudonana GN=rps5 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11 Identity = 41/129 (31.78%), Postives = 68/129 (52.71%), Query Frame = -1 Query: 379 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 765 +KI V K + G++ F+A VV+GD +G VG+GV +++V A + A + ++I V I + ++P V G G+ + M P+ G+G++A + VL+ AGI +V GS L N Sbjct: 31 IKISRVTKVTKGGKKLSFRAVVVIGDENGKVGVGVGKAEDVVNAFKKAKTDGRKNLIDV-------PITKSLSIPHAVIGDLGACKIIMRPSIEGSGVIAGGAVRTVLEVAGIKNVIAKQLGSDNLLNN 152
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RR5_PHATR (30S ribosomal protein S5, chloroplastic OS=Phaeodactylum tricornutum GN=rps5 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11 Identity = 41/129 (31.78%), Postives = 67/129 (51.94%), Query Frame = -1 Query: 379 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 765 +KI V K + G++ F+A VVVGD +G VG+GV + +V A + A + ++I + I + ++P V G G+ V M P+ G+G++A + VL+ AG+ +V GS L N Sbjct: 31 IKISRVSKVTKGGKKLSFRAIVVVGDENGKVGVGVAKADDVVNAFKKAKTDGRKNLIEL-------PITKALSIPHNVAGNFGACKVIMRPSIEGSGVIAGGAVRIVLEVAGVKNVIAKQLGSNNLLNN 152 The following BLAST results are available for this feature:
BLAST of CF835472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 384
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835472 ID=CF835472; Name=CF835472; organism=Citrus sinensis; type=EST; length=765bpback to top |