CF835472

Overview
NameCF835472
Unique NameCF835472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 63/136 (46.32%), Postives = 83/136 (61.03%), Query Frame = -1
Query:  346 QKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLK 747
            QK+   G +TR++   +VGD DGHVG+G+  S ++  A   AI  AKL++I V RG   W    G PH++P +V GK GSV V + PAP+G GIVA    KK+ + AGI DV+  S G TKT  N V A F+ L K
Sbjct:   72 QKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMNHVFAVFDALKK 207          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 59/143 (41.26%), Postives = 89/143 (62.24%), Query Frame = -1
Query:  343 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 765
            + I  +Q+   +G+R +F+A V+VG+ +G++G G     +V  AI+ AI  AK++++ VRRG   W       H++P +V G  GSV V + PAP+G G+V   + KKVL+ AGI D +T +RG T+T  NF KATF  L +T
Sbjct:   54 LDIAMMQRMTDSGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINFAKATFNALKET 196          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_PICTO (30S ribosomal protein S5P OS=Picrophilus torridus GN=rps5p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 61/143 (42.66%), Postives = 88/143 (61.54%), Query Frame = -1
Query:  343 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 765
            + I   Q+   +G+R  +    VVG+ +G+VG+G   +KE A AI+ AI  AKL++I ++RG   W    G+PHT+P  V GK GSV+V + PAP+G G+    V K +L+ AGIDD +  + G TKT  N+  ATF+ L KT
Sbjct:   51 INIERAQRMTDSGRRMNYSITAVVGNGNGYVGVGRGKAKEAAPAIKKAIDNAKLNIIEIKRGCGSWECGCGKPHTLPFLVNGKSGSVSVTLKPAPQGVGLAVGDVVKVILRMAGIDDAWGFAAGHTKTTVNYALATFDALKKT 193          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 57/139 (41.01%), Postives = 88/139 (63.31%), Query Frame = -1
Query:  340 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTY 750
            +QK    GQ TRFKA V  G+ +G++G+G   +K++  AI  A   A L+V P++ G   W  +  + H+VP KV GK GSV + ++PAPRG G+VA    +++L+ AG+ D +T+++GST T  +  KA  ECL +T+
Sbjct:   78 IQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPTTNSTSKAVLECLRQTF 216          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 59/156 (37.82%), Postives = 92/156 (58.97%), Query Frame = -1
Query:  304 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 765
            + I  VQ+   +G+R +F+  VV+G+ DG+VG       +V  AI+ AI +AKL++I  P+  G W ++ G  +++  + TGK GSV V + PAPRG G+ AA   + VL+ AG++D +T   G+T+T  N  KAT+  L       TP+  R+ R
Sbjct:   51 LDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLNLAKATYNALRNASESRTPEHTRQVR 206          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.962e-23
Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = -1
Query:  343 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 765
            + I  VQ+   +G+R +F+  VVVG+ +G+VGL      +V  AIR AI  AKL++I V RG   W    G  HTVP +V G+ GS+ V ++PAPRG G+ A    KKVL+ AG  DV++ + G T+T  NF  AT++ L  T
Sbjct:   58 LDISMVQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKKVLEMAGYKDVWSRTEGETRTTINFALATYKALEST 200          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.066e-21
Identity = 54/149 (36.24%), Postives = 86/149 (57.72%), Query Frame = -1
Query:  325 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTP 765
            + I  VQ+   +G+R +F+  V +G+ +G +G       +V +AI+ AI +AKL++I V RG   W +  G  +++     GK GSVTV ++PAP+G G+ AA     +L+ AG++D +T S G+T+T  N  KAT+  L       TP
Sbjct:   57 LDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAAETVSNILELAGVEDAWTRSNGNTRTTVNLAKATYNALRNASQSRTP 205          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_LACSS (30S ribosomal protein S5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.507e-16
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = -1
Query:  346 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLK 765
            + I  V K  + G+R RF A V+VGD +GHVG G   ++EV  AIR A+  AK ++I V       K+G   T+P +V G+ G+  V + PA  G+GI A    + V++ AGIDDV + + GS KT  N ++AT + L +
Sbjct:   16 VSINRVTKVVKGGRRLRFAAIVIVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLINV------PKVGT--TLPHEVIGRFGAGRVLLKPAVEGSGIAAGGAVRAVMELAGIDDVTSKTLGS-KTAINVIRATIDGLTR 146          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_PEDPA (30S ribosomal protein S5 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.020e-15
Identity = 56/133 (42.11%), Postives = 75/133 (56.39%), Query Frame = -1
Query:  352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 750
            V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  A+ S+I V        +G   T+P +  G  G   + M PA  G+G+ A    + V++ AGIDDV TS R  + T  N V+ATFE L
Sbjct:   22 VTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVETARKSLIEV------PIVGT--TLPHEAVGVYGGGRILMKPALEGSGVAAGGAVRAVMELAGIDDV-TSKRLGSNTAVNVVRATFEGL 145          
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_GEOKA (30S ribosomal protein S5 OS=Geobacillus kaustophilus GN=rpsE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.740e-15
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = -1
Query:  352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 750
            V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P +V G  G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+ATF+ L
Sbjct:   21 VAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATFDGL 144          
The following BLAST results are available for this feature:
BLAST of CF835472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
RS5_NANEQ1.571e-2446.3230S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_METB62.679e-2441.2630S ribosomal protein S5P OS=Methanoregula boonei ... [more]
RS5_PICTO3.499e-2442.6630S ribosomal protein S5P OS=Picrophilus torridus ... [more]
RS5_CENSY1.736e-2341.0130S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]
RS5_NATPD2.268e-2337.8230S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_UNCMA2.962e-2343.3630S ribosomal protein S5P OS=Uncultured methanogen... [more]
RS5_HALWD8.066e-2136.2430S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]
RS5_LACSS3.507e-1640.0030S ribosomal protein S5 OS=Lactobacillus sakei su... [more]
RS5_PEDPA1.020e-1542.1130S ribosomal protein S5 OS=Pediococcus pentosaceu... [more]
RS5_GEOKA1.740e-1540.6030S ribosomal protein S5 OS=Geobacillus kaustophil... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01E16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835472 ID=CF835472; Name=CF835472; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTGATAAATAAACATCCATTCAAGAAAACTCTGATTG
CAAAACTTTAAAGCAAACAATTGTGTCCCCAAATAGCAACATACTAGTCC
TGCAGAAATGAAAAACAGAAAAGTCTGTAACAAACAAAGCTATACTATAA
AGTCAACCAAAATGCCTTTCATTCTAATGCTCTCCTCTCCATGCAGCCTT
AAGTAGCTTAAGGTTCAACTTGATCAACTTCTGTGATGACTGCCTTGCTG
ATGGGCTTTGGCGTCAAAAGATCTGTGTACTCTTGGTATGGAGATTTCAC
AAAACGAGTCTCCCTCCAGAAATCAGGTGTAAGGAAGCCATATGTCTTCA
ACAAACACTCAAAGGTTGCCTTGACAAAGTTTCCAAGAGTCTTGGTCGAC
CCACGAGAAGATGTGAAAACATCGTCAATACCAGCAAACTGCAGCACCTT
CTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGGCCGGAACCA
TCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACACGGCACGGTG
TGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCACCGGAATCAC
CGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGGCAACCTCTT
TGGAGCACTTAACGCCAAGACCCACGTGGCCGTCCGTGTCACCGACGACG
ACGAAGGCCTTGAACCTCGTCCTCTGACCGGCACGTGGCTGTTTCTGCAC
CGGCATGATCTTCAT
back to top