CF835472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24 Identity = 63/136 (46.32%), Postives = 83/136 (61.03%), Query Frame = -1 Query: 346 QKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLK 747 QK+ G +TR++ +VGD DGHVG+G+ S ++ A AI AKL++I V RG W G PH++P +V GK GSV V + PAP+G GIVA KK+ + AGI DV+ S G TKT N V A F+ L K Sbjct: 72 QKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMNHVFAVFDALKK 207
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24 Identity = 59/143 (41.26%), Postives = 89/143 (62.24%), Query Frame = -1 Query: 343 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 765 + I +Q+ +G+R +F+A V+VG+ +G++G G +V AI+ AI AK++++ VRRG W H++P +V G GSV V + PAP+G G+V + KKVL+ AGI D +T +RG T+T NF KATF L +T Sbjct: 54 LDIAMMQRMTDSGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINFAKATFNALKET 196
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_PICTO (30S ribosomal protein S5P OS=Picrophilus torridus GN=rps5p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24 Identity = 61/143 (42.66%), Postives = 88/143 (61.54%), Query Frame = -1 Query: 343 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 765 + I Q+ +G+R + VVG+ +G+VG+G +KE A AI+ AI AKL++I ++RG W G+PHT+P V GK GSV+V + PAP+G G+ V K +L+ AGIDD + + G TKT N+ ATF+ L KT Sbjct: 51 INIERAQRMTDSGRRMNYSITAVVGNGNGYVGVGRGKAKEAAPAIKKAIDNAKLNIIEIKRGCGSWECGCGKPHTLPFLVNGKSGSVSVTLKPAPQGVGLAVGDVVKVILRMAGIDDAWGFAAGHTKTTVNYALATFDALKKT 193
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23 Identity = 57/139 (41.01%), Postives = 88/139 (63.31%), Query Frame = -1 Query: 340 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTY 750 +QK GQ TRFKA V G+ +G++G+G +K++ AI A A L+V P++ G W + + H+VP KV GK GSV + ++PAPRG G+VA +++L+ AG+ D +T+++GST T + KA ECL +T+ Sbjct: 78 IQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPTTNSTSKAVLECLRQTF 216
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23 Identity = 59/156 (37.82%), Postives = 92/156 (58.97%), Query Frame = -1 Query: 304 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTPDFWRETR 765 + I VQ+ +G+R +F+ VV+G+ DG+VG +V AI+ AI +AKL++I P+ G W ++ G +++ + TGK GSV V + PAPRG G+ AA + VL+ AG++D +T G+T+T N KAT+ L TP+ R+ R Sbjct: 51 LDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLNLAKATYNALRNASESRTPEHTRQVR 206
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.962e-23 Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = -1 Query: 343 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKT 765 + I VQ+ +G+R +F+ VVVG+ +G+VGL +V AIR AI AKL++I V RG W G HTVP +V G+ GS+ V ++PAPRG G+ A KKVL+ AG DV++ + G T+T NF AT++ L T Sbjct: 58 LDISMVQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKKVLEMAGYKDVWSRTEGETRTTINFALATYKALEST 200
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.066e-21 Identity = 54/149 (36.24%), Postives = 86/149 (57.72%), Query Frame = -1 Query: 325 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLKTYGFLTP 765 + I VQ+ +G+R +F+ V +G+ +G +G +V +AI+ AI +AKL++I V RG W + G +++ GK GSVTV ++PAP+G G+ AA +L+ AG++D +T S G+T+T N KAT+ L TP Sbjct: 57 LDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAAETVSNILELAGVEDAWTRSNGNTRTTVNLAKATYNALRNASQSRTP 205
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_LACSS (30S ribosomal protein S5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsE PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.507e-16 Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = -1 Query: 346 MKIMPVQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECLLK 765 + I V K + G+R RF A V+VGD +GHVG G ++EV AIR A+ AK ++I V K+G T+P +V G+ G+ V + PA G+GI A + V++ AGIDDV + + GS KT N ++AT + L + Sbjct: 16 VSINRVTKVVKGGRRLRFAAIVIVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLINV------PKVGT--TLPHEVIGRFGAGRVLLKPAVEGSGIAAGGAVRAVMELAGIDDVTSKTLGS-KTAINVIRATIDGLTR 146
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_PEDPA (30S ribosomal protein S5 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsE PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.020e-15 Identity = 56/133 (42.11%), Postives = 75/133 (56.39%), Query Frame = -1 Query: 352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 750 V K + G+R RF A VVVGD +GHVG G ++EV AIR A+ A+ S+I V +G T+P + G G + M PA G+G+ A + V++ AGIDDV TS R + T N V+ATFE L Sbjct: 22 VTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVETARKSLIEV------PIVGT--TLPHEAVGVYGGGRILMKPALEGSGVAAGGAVRAVMELAGIDDV-TSKRLGSNTAVNVVRATFEGL 145
BLAST of CF835472 vs. ExPASy Swiss-Prot
Match: RS5_GEOKA (30S ribosomal protein S5 OS=Geobacillus kaustophilus GN=rpsE PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.740e-15 Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = -1 Query: 352 VQKQPRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFECL 750 V K + G+R RF A VVVGD +GHVG G ++EV AIR AI AK ++I V +G T+P +V G G+ + + PA G G++A + VL+ AGI D+ + S GS + N V+ATF+ L Sbjct: 21 VAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVRATFDGL 144 The following BLAST results are available for this feature:
BLAST of CF835472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 384
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835472 ID=CF835472; Name=CF835472; organism=Citrus sinensis; type=EST; length=765bpback to top |