CF835473

Overview
NameCF835473
Unique NameCF835473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 9.645e-42
Identity = 83/105 (79.05%), Postives = 96/105 (91.43%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++
Sbjct:   59 EWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIV 163          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.645e-41
Identity = 80/105 (76.19%), Postives = 98/105 (93.33%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +WVPVTKLGRLV+ GKI+S+E+IYL+SLPIKEYQI+D  +  +L DEVMK++PVQKQTRAGQRTRFKAFVV+GD+DGHVGLG+KC+KEVATAIRGAII+ KLS++
Sbjct:   33 EWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLP-RLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIM 136          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_CRIGR (40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.393e-40
Identity = 82/103 (79.61%), Postives = 94/103 (91.26%), Query Frame = 3
Query:  183 VPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++
Sbjct:    1 IPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIV 103          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_CAEEL (40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.793e-38
Identity = 79/105 (75.24%), Postives = 92/105 (87.62%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W PVTKLGRLV+E KI +LE+IYL+SLPIKE++IID L  + LKDEV+KI PVQKQT AGQRTRFKAFV +GD  GHVGLGVKCSKEVATAIRGAI+ AKL+V+
Sbjct:   56 EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSN-LKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVV 159          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_DICDI (40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.449e-38
Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = 3
Query:  180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            W PVTKLGRLV  G + ++ +IYL SLPIKEYQIID  +   LKDEVMKI+PVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKC+KEVATAI GAI+ AKLSVI
Sbjct:   49 WTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFLN--LKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVI 150          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_YEAST (40S ribosomal protein S2 OS=Saccharomyces cerevisiae GN=RPS2 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.211e-37
Identity = 78/104 (75.00%), Postives = 92/104 (88.46%), Query Frame = 3
Query:  180 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            WVPVTKLGRLV+ GKI ++E+I+LHSLP+KE+QIIDTL+   L+DEVM I PVQKQTRAGQRTRFKA VVVGD++GHVGLG+K +KEVA AIR  II+AKLSVI
Sbjct:   35 WVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPG-LQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVI 137          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS2_LEIAM (40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.396e-32
Identity = 68/106 (64.15%), Postives = 86/106 (81.13%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGH-KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +WVP TKLGRLV+  K+ SLE+I+L S+PIKE+QI+DTLI   KL DE+MKI PVQK T AGQRTRFKAF VVGD DGH+G+G +  KEV+ AIR ++I AKL+++
Sbjct:   44 EWVPCTKLGRLVKAQKVTSLEEIFLFSMPIKEHQIVDTLIAEGKLHDEMMKIYPVQKATSAGQRTRFKAFNVVGDCDGHIGIGARVGKEVSLAIRASMIAAKLNIV 149          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_THEAC (30S ribosomal protein S5P OS=Thermoplasma acidophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.566e-20
Identity = 50/105 (47.62%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +WVP T+LG+LV  G+I+++ +     LP+KEY+I+D L+ + LKDEV+ I   Q+ T +G+R  +   VVVG+ DG+VGLG+  SKE A AIR A+I AKL+++
Sbjct:    4 EWVPKTQLGKLVASGQIKTMGEALRSKLPLKEYEIVDYLLPN-LKDEVIDIKRAQRMTDSGRRMTYSITVVVGNGDGYVGLGIGRSKEAAPAIRKALINAKLNIM 107          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_HYPBU (30S ribosomal protein S5P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps5p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.945e-20
Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W P T +GRLV+EG+IRSL +I+  +LPI E +I+D LIG +LK E + +  VQK T AG+  RF+  VV+G+ +G VG+G   ++++A AI  AI  AKL++I
Sbjct:   11 EWQPRTYVGRLVKEGRIRSLSEIFEKNLPILEPEIVDYLIGPELKSETVDVRLVQKMTDAGRINRFRVVVVIGNENGFVGVGQGKARQLAVAIEKAIRNAKLNII 115          
BLAST of CF835473 vs. ExPASy Swiss-Prot
Match: RS5_THEVO (30S ribosomal protein S5P OS=Thermoplasma volcanium GN=rps5p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.770e-19
Identity = 47/105 (44.76%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  177 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI 491
            +W P T+LG+LV  G+I+++ +     LP+KEY+I+D L+ + +KDEV+ I   Q+ T +G+R  +   VVVG+ DG++GLG+  SKE A AIR A+I AKL+++
Sbjct:    4 EWTPRTQLGKLVASGQIKTISEALKTKLPLKEYEIVDYLLPN-IKDEVIDIKRAQRMTDSGRRMTYSITVVVGNEDGYIGLGIGRSKEAAPAIRKALINAKLNIM 107          
The following BLAST results are available for this feature:
BLAST of CF835473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS2_BOVIN9.645e-4279.0540S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]
RS2_SCHPO1.645e-4176.1940S ribosomal protein S2 OS=Schizosaccharomyces po... [more]
RS2_CRIGR1.393e-4079.6140S ribosomal protein S2 (Fragment) OS=Cricetulus ... [more]
RS2_CAEEL3.793e-3875.2440S ribosomal protein S2 OS=Caenorhabditis elegans... [more]
RS2_DICDI8.449e-3876.9240S ribosomal protein S2 OS=Dictyostelium discoide... [more]
RS2_YEAST3.211e-3775.0040S ribosomal protein S2 OS=Saccharomyces cerevisi... [more]
RS2_LEIAM1.396e-3264.1540S ribosomal protein S2 OS=Leishmania amazonensis... [more]
RS5_THEAC3.566e-2047.6230S ribosomal protein S5P OS=Thermoplasma acidophi... [more]
RS5_HYPBU7.945e-2047.6230S ribosomal protein S5P OS=Hyperthermus butylicu... [more]
RS5_THEVO1.770e-1944.7630S ribosomal protein S5P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E16_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835473 ID=CF835473; Name=CF835473; organism=Citrus sinensis; type=EST; length=491bp
TTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAAACACACAAG
AACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATTCGGACGCGG
CTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCCGTCGCC
GCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACGAAACTC
GGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAATCTACCT
CCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTATCGGCC
ACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGAAACAGACA
CGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGGTGACAC
GGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTGCCACTG
CCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATT
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