CF835476

Overview
NameCF835476
Unique NameCF835476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5523 contig Csv1_Contig5523:39..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF835476 vs. ExPASy Swiss-Prot
Match: OSTC_HUMAN (Oligosaccharyltransferase complex subunit OSTC OS=Homo sapiens GN=OSTC PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.672e-23
Identity = 57/141 (40.43%), Postives = 85/141 (60.28%), Query Frame = 2 
Query:  140 PYSIIRPPRLRLKLPSFT-LPSPMTVFALVLLTYFMVVSGFVYDVIVEPPGIGSTQDPATGSVRPVVFLPGRVNGQYIIEGLSSXXXXXXXXXXXXXXDLALDKNRAKSVKVSYASAGISSIVIAYIMSMLFIRIKIPGYL 559
            P+ ++  P L+LK P +  +PS MTV+ALV+++YF++  G +YDVIVEPP +GS  D   G  RPV FL  RVNGQYI+EGL+S              D +   N  K  +      G   +++++ M+ +F+R+K+PGYL
Sbjct:    8 PFLVLECPNLKLKKPPWLHMPSAMTVYALVVVSYFLITGGIIYDVIVEPPSVGSMTD-EHGHQRPVAFLAYRVNGQYIMEGLASSFLFTMGGLGFIILDRSNAPNIPKLNRFLLLFIGFVCVLLSFFMARVFMRMKLPGYL 147
The following BLAST results are available for this feature:
BLAST of CF835476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
OSTC_HUMAN4.672e-2340.43Oligosaccharyltransferase complex subunit OSTC OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835476 ID=CF835476; Name=CF835476; organism=Citrus sinensis; type=EST; length=635bp
CGACTCTGATCCCATTCAGGACGATTCACATACTTCTGCAAAAATGGCTC
CGAAAGCAGAAGCAGCACAAACCCTCGCATCACAATCCGACGCATCGCAG
TCGTCAATTGACCCACTGTTCCACATCCTCAAAATCTTCCCTTACTCGAT
CATCCGCCCGCCGCGTCTCCGCCTGAAGCTGCCGTCATTCACGCTCCCAT
CCCCAATGACCGTCTTCGCCCTCGTCCTCCTAACCTACTTTATGGTCGTG
TCGGGCTTCGTCTACGACGTCATCGTTGAGCCTCCTGGCATCGGGTCCAC
GCAGGACCCCGCCACCGGTTCCGTACGCCCCGTCGTCTTCCTACCCGGCC
GCGTCAACGGGCAGTACATCATCGAGGGACTCTCTTCTGGGTTCATGTTC
GTGCTCGGCGGGATGGGCTTCGTGCTTTTGGATCTCGCTCTTGATAAGAA
TAGGGCTAAGAGTGTTAAGGTCTCTTATGCCTCTGCTGGGATCTCTTCCA
TTGTCATTGCTTATATTATGAGTATGCTCTTTATTCGCATTAAGATCCCT
GGTTATCTTAGGTGAATTTTTATTTTCTTTTTTAATGCTGTTCGTTAACT
TAGTTTTGATAAGAGTTTAATTGGGTTGTGGATTT
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