CF835481

Overview
NameCF835481
Unique NameCF835481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: LVR_LEIAQ (Levodione reductase OS=Leifsonia aquatica GN=lvr PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.509e-12
Identity = 51/188 (27.13%), Postives = 88/188 (46.81%), Query Frame = -1
Query:  254 IESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVA------LKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAG 799
            +E+ V    E F RID   NNAG+ G       +T  E+D  +  NL G +L  + V   MR+                  G   G   YA++K G+  +T+  A+E G + IR+N+I+PG   + + E  M++    N        ++  P + +G + P + ++V +L+ D + YV+  +  +D G
Sbjct:   79 VEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSG---YAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYGEA-PEIAAVVAFLLSDDASYVNATVVPIDGG 262          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.509e-12
Identity = 54/192 (28.12%), Postives = 90/192 (46.88%), Query Frame = -1
Query:  248 ESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTE-EEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLF--------ISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAGAT 796
            + +V+ A   F  +DVLINNAG+   + +P+   E  +W+  ++ NLTG +L+SK+    M                      +P   AY +SK G+  +TK MA++   H IRVN + PG+           E  EG +++  +     K  PL   G  +  + +++ +L  D S Y++G+    D G T
Sbjct:   68 QHAVESAVHTFGGLDVLINNAGIE--IVAPIHEMELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVGGLVAWPDIP---AYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPLNEKSFLENNEGTLEE--IKKEKAKVNPLLRLGKPE-EIANVMLFLASDLSSYMTGSAITADGGYT 251          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.509e-12
Identity = 53/192 (27.60%), Postives = 91/192 (47.40%), Query Frame = -1
Query:  248 ESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTE-EEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLF--------ISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAGAT 796
            +++++ A + F  +DVLINNAG+   + +P+   E   W+  +  NLTG +L+SK+    M                      +P   AY +SK G+  +T+ MA++   HNIRVN + PG+           E  EG +++  +     K  PL   G  +  + +++ +L  D S Y++G+    D G T
Sbjct:   68 QNAIRSAVDKFGGLDVLINNAGIE--IVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIP---AYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEE--IKKEKAKVNPLLRLGKPE-EIANVMLFLASDLSSYMTGSAITADGGYT 251          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.279e-12
Identity = 48/168 (28.57%), Postives = 74/168 (44.05%), Query Frame = -1
Query:  254 IDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAG 757
            ID+L++NA V     S +D TEE WD  +  N+    L++K V   M                       PG   Y  SK  L  +TK +A+EL   NIRVN ++PGL  +  +  L   K       +T+ +R  G  +     +V +L  + + Y++G   +V  G
Sbjct:   92 IDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPS---PGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDC-AGIVSFLCSEDASYITGETVVVGGG 255          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.279e-12
Identity = 48/168 (28.57%), Postives = 74/168 (44.05%), Query Frame = -1
Query:  254 IDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAG 757
            ID+L++NA V     S +D TEE WD  +  N+    L++K V   M                       PG   Y  SK  L  +TK +A+EL   NIRVN ++PGL  +  +  L   K       +T+ +R  G  +     +V +L  + + Y++G   +V  G
Sbjct:   92 IDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPS---PGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDC-AGIVSFLCSEDASYITGETVVVGGG 255          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: FABG_BUCAI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fabG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.588e-12
Identity = 53/186 (28.49%), Postives = 92/186 (49.46%), Query Frame = -1
Query:  254 IESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSW-LVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITE---GLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAG 799
            I   +Q+ ++    ID+LINNAG++      ++    EWD  IKTNL+  + LV   +   ++                 N+GQ    V Y++SK+GL    K +ALE+    I VN +SPGL  +  TE    +  +K+L+N     +P++ FG  +    +++ +L    + Y++G+   V+ G
Sbjct:   66 ITEKIQEIYKKKHSIDILINNAGIKED-NLLVNMKSTEWDDVIKTNLSSVFHLVKSVIRSMIKKRQGRIITIGSVIAYTGNKGQ----VNYSASKSGLIGFHKSLALEVASKGITVNIVSPGLIKTNFTEKLNSIQYQKYLSN-----IPMKRFGQKEEVADAVI-FLASKKASYITGHTLHVNGG 240          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.588e-12
Identity = 48/171 (28.07%), Postives = 78/171 (45.61%), Query Frame = -1
Query:  248 RIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAGAT 760
            R+D L+NNAG+  ++K   D + EEWD   + N+   +L ++ V   MR                      PG  AY +SK  +   TK  A++L   NIRVNS+ PG+  + +T+ ++         L    L         ++  V +L+ D + +V G+  +VD G T
Sbjct:   83 RLDALVNNAGIL-TLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGA---PGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQILDAPQSARALLGPTLLGR-AAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYT 248          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.588e-12
Identity = 48/171 (28.07%), Postives = 78/171 (45.61%), Query Frame = -1
Query:  248 RIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAGAT 760
            R+D L+NNAG+  ++K   D + EEWD   + N+   +L ++ V   MR                      PG  AY +SK  +   TK  A++L   NIRVNS+ PG+  + +T+ ++         L    L         ++  V +L+ D + +V G+  +VD G T
Sbjct:   83 RLDALVNNAGIL-TLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGA---PGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQILDAPQSARALLGPTLLGR-AAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYT 248          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: CBR2_MOUSE (Carbonyl reductase [NADPH] 2 OS=Mus musculus GN=Cbr2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.588e-12
Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = -1
Query:  254 SVQKAWEAFWRIDVLINNAGVRGSVKSP-LDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAG 790
            + +KA      +D+L+NNA +   +  P L+ T+E +D +   NL   + VS+ V   M +                     P  + Y+S+K  +  +TK MA+ELG H IRVNS++P + ++++ + +           +  PLR+F   +  + S++ +L+ D S   SG   +VDAG
Sbjct:   66 ATEKALGGIGPVDLLVNNAAL--VIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT--FPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSIL-FLLSDRSASTSGGGILVDAG 240          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: YLX6_SCHPO (Uncharacterized oxidoreductase C922.06 OS=Schizosaccharomyces pombe GN=SPAC922.06 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.533e-12
Identity = 50/184 (27.17%), Postives = 87/184 (47.28%), Query Frame = -1
Query:  254 IESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDW-TEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQK-KWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAG 799
            IE++++K  +    IDVLINNAG+     +P +  + E WDH++   L G++L  +YV   M                        G  AY+++KAGL ++TK +A+  G   IRVN  +PG   S   +   +K   + +   +  P+   GT +    +++ +L    + +++G    VD G
Sbjct:   60 IETAIEKVIQTLGPIDVLINNAGLADD--TPFEQLSHESWDHDVSLVLRGNYLTQRYVIPHMAKQGKGGSIVNIGSVNGHI---YLGSPAYSAAKAGLENLTKALAVRYGPLGIRVNVCAPGTIWSPAWDERFKKHPDVGDRMKRWYPVGRLGTPEDVARAVI-FLADSKNSFITGTTLYVDGG 237          
The following BLAST results are available for this feature:
BLAST of CF835481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
LVR_LEIAQ2.509e-1227.13Levodione reductase OS=Leifsonia aquatica GN=lvr P... [more]
BACC_BACSU2.509e-1228.13Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC2_BACSU2.509e-1227.60Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
DHRS4_PONAB4.279e-1228.57Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHRS4_HUMAN4.279e-1228.57Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
FABG_BUCAI5.588e-1228.493-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
CPNA_COMTE5.588e-1228.07Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS95.588e-1228.07Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]
CBR2_MOUSE5.588e-1227.78Carbonyl reductase [NADPH] 2 OS=Mus musculus GN=Cb... [more]
YLX6_SCHPO9.533e-1227.17Uncharacterized oxidoreductase C922.06 OS=Schizosa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01E22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835481 ID=CF835481; Name=CF835481; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTTTATAAAATCGACAATAGTCGTAAGTTTTTTCAAT
ACAACATTTTAAACAAACTACAATGGTCATAAGTTTTTCCAATACTGCAG
TTTATCAAAATTCGATTGTCATAAGTTTTTCCAATACAATGTTTAAACAA
ACTTCAGCCAGAACCCTAGCAACAGAATGAGGAATACTACACTAACTCAC
ATTTTTCTAGGAACTCAAAGGGAAGAGAAAATAGGGACACCAGGAAGTGT
AGCCCCTGCATCCACAATGAACATGTTTCCTGAAACATATTTGGAAGAGT
CATGAATTAAATACCTAACAAGTGATGTCAATGCTGGATCTGAGGTGCCA
AATTCTCTTAAAGGGACGGTTTTCAAGGCAACATTATTTAGCCATTTTTT
TTGCATAAGACCTTCAGTAATCTCAGATATGAAAAGTCCAGGTGATATTG
AGTTAACTCTGATGTTGTGCACCCCCAGTTCCAATGCCATGACCTTAGTC
ATGGAATTAAGGCCTGCCTTGGAAGAAGCATAGGCAACACCTCCAGGTAA
CTGTCCACGATTAATACCAGCAATAGAAGATATGTTAATTATTGATCCTC
CCAGATTTGCATCACGCATTCGAATGCATACATACTTGGAAACCAACCAA
GATCCTGTTAAATTCGTTTTGATATTGTGATCCCACTCCTCCTCGGTCCA
ATCCAACGGACTCTTCACACTGCCTCTAACACCGGCATTATTAATCAAAA
CATCGATTCGCCAGAAGGCTTCCCAAGCCTTCTGTACGGAACTCTCAAT
back to top