CF835481

Overview
NameCF835481
Unique NameCF835481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 47/169 (27.81%), Postives = 75/169 (44.38%), Query Frame = -1
Query:  251 IDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAGA 757
            ID+L++NA V       +D TEE WD  +  N+    L++K V   M                        G   Y  SK  L  +TK +ALEL   NIRVN ++PGL  +  ++ L + K      ++ + +R  G  +     +V +L  + + Y++G   +V  GA
Sbjct:   92 IDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAF---NPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKALWEDKAQEENIIQKLRIRRLGKPEEC-AGIVSFLCSEDASYITGETVVVAGGA 256          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: BDHA_RHIME (D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium meliloti GN=bdhA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 52/185 (28.11%), Postives = 86/185 (46.49%), Query Frame = -1
Query:  248 EAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEI----------TEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAGAT 772
            + F   D+L+NNAGV+  V+   D+  E+WD  I  NL+ S+   +     M+                      P   AY ++K G+  +TK +ALE+    + VNSI PG  ++ +          T G+ +++ +N V LK  P ++F T +  + SL  YL  D +  ++G    +D G T
Sbjct:   77 DRFGGADILVNNAGVQ-FVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVAS---PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFITVE-QVASLALYLAGDDAAQITGTHVSMDGGWT 256          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 49/192 (25.52%), Postives = 96/192 (50.00%), Query Frame = -1
Query:  248 ESSVQKAWEAFWRIDVLINNAGV--RGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQK-------KWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAGAT 796
            E  V+K  E F R+D+L+NNAG+   G+++   + +EE++D  +  N+ G +L+SKY   +M+                     +P    Y+ SKA L  +T+ +A++   + IRVN++ PG   +  +EGLM +       + L       +P++  G  +  +   + +   D + +++G++  +D G+T
Sbjct:   68 EQIVKKTVETFGRLDILVNNAGIVPYGNIE---ETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIG---IPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCPG---TTQSEGLMARVKASPNPEELLKKMTSRIPMKRLG-KEEEIAFAILFAACDEAGFMTGSIINIDGGST 249          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: NODG_RHIS3 (Nodulation protein G OS=Rhizobium sp. (strain N33) GN=nodG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = -1
Query:  245 QKAWEAFWRIDVLINNAGVRGSVKSPL--DWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAGATL 784
            QKA      +D+L+NNAG+    K  L    ++ +WD  ++ NLT  + +++ +   M                       PG   Y +SKAG+   +K +A E+   NI VN ++PG   S +T+ L  K+      +  +P R  GTS   + S V YL  + + YV+G    V+ G  +
Sbjct:   72 QKAEADLEGVDILVNNAGI---TKDGLFVRMSDADWDTVLEVNLTAVFRLTRELTHPMMRRRHGRIINITSVVGVTGN---PGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKLNDKQ--KEAIMAAIPTRRMGTS-VEVASAVAYLASNEAAYVTGQTIHVNGGLAM 244          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 47/186 (25.27%), Postives = 89/186 (47.85%), Query Frame = -1
Query:  248 IESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTE--EEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAGAT 799
            + +++    E F  IDVL+NNAG+ G+ ++ +  T   E++D  +  N+ G +L  + V   M                  +    PG  AY +SK  +  +TK +A++     IR N++ PG+  + +T+  + +  L +  L  +P +E GT+   +   V +L  + + YV+G   ++D   T
Sbjct:   67 VNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHM---LLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTA-AQVADAVMFLAGEDATYVNGAALVMDGAYT 248          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: FABG_SHIFL (3-oxoacyl-[acyl-carrier-protein] reductase OS=Shigella flexneri GN=fabG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = -1
Query:  254 IESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAG 799
            IES ++K    F  +D+L+NNAG+       +   +EEW+  I+TNL+  + +SK V   M                    G   G   YA++KAGL   +K +A E+    I VN ++PG   +++T  L   +      L  VP    G +   + + V +L  D + Y++G    V+ G
Sbjct:   66 IESVLEKIRAEFGEVDILVNNAGITRD-NLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNG---GQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAG--ILAQVPAGRLGGAQ-EIANAVAFLASDEAAYITGETLHVNGG 240          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: FABG_ECOLI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Escherichia coli (strain K12) GN=fabG PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = -1
Query:  254 IESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAG 799
            IES ++K    F  +D+L+NNAG+       +   +EEW+  I+TNL+  + +SK V   M                    G   G   YA++KAGL   +K +A E+    I VN ++PG   +++T  L   +      L  VP    G +   + + V +L  D + Y++G    V+ G
Sbjct:   66 IESVLEKIRAEFGEVDILVNNAGITRD-NLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNG---GQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAG--ILAQVPAGRLGGAQ-EIANAVAFLASDEAAYITGETLHVNGG 240          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: FABG2_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplastic OS=Brassica napus GN=bkr2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.731e-11
Identity = 55/190 (28.95%), Postives = 92/190 (48.42%), Query Frame = -1
Query:  245 IESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVC-IRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGL---MQKKWLNNVALKTVPLREFGTSDPALTSLVRYL-IHDSSKYVSGNMFIVDAGATL 799
            +++ ++ A +A+  IDV++NNAG+       +   + +WD  I  NLTG +L ++    I M+                 N GQ      YA++KAG+   +K  A E    NI VN + PG   S++T  L   M+KK      L T+PL  +G  +  +  LV +L +  ++ Y++G  F +D G  +
Sbjct:  150 VDAMMKTAVDAWGTIDVVVNNAGITRDTLL-IRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQ----ANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKK-----ILGTIPLGRYGQPED-VAGLVEFLALSPAASYITGQAFTIDGGIAI 328          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: NODG_RHIME (Nodulation protein G OS=Rhizobium meliloti GN=nodG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 48/174 (27.59%), Postives = 80/174 (45.98%), Query Frame = -1
Query:  245 IDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVC---IRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAGATL 757
            +D+L+NNAG+       L   + +WD  ++ NLT  + +++ +    IR R+                     PG   Y +SKAG+   +K +A E+   NI VN ++PG   S +T+ L  K+      +  +P+   GT    + S V YL  D + YV+G    V+ G  +
Sbjct:   81 VDILVNNAGITKDGLF-LHMADPDWDIVLEVNLTAMFRLTREITQQMIRRRNGRIINVTSVAGAIGN------PGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKLNHKQ--KEKIMVAIPIHRMGTG-TEVASAVAYLASDHAAYVTGQTIHVNGGMAM 244          
BLAST of CF835481 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 49/181 (27.07%), Postives = 80/181 (44.20%), Query Frame = -1
Query:  254 ESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXNRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSDPALTSLVRYLIHDSSKYVSGNMFIVDAG 796
            E  V  A +    ID+L++NA V     + +D TEE W+  +  N+T S ++ K V   M                       P    Y  SK  L  +TK  A EL   NIRVN ++PGL  +  +  L ++K    +  +T+ +R  G  +  +  +V +L  + + Y++G   +V  G
Sbjct:   79 EKLVNMALKLHQGIDILVSNAAVNPFFGNLMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVL---FPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTHFSSVLWKEKAREEMIKETMQIRRLGKPEDCV-GIVSFLCSEDASYINGETVVVGGG 255          
The following BLAST results are available for this feature:
BLAST of CF835481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
DHRS4_RABIT3.622e-1127.81Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
BDHA_RHIME3.622e-1128.11D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium ... [more]
Y325_THEMA4.731e-1125.52Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
NODG_RHIS34.731e-1128.02Nodulation protein G OS=Rhizobium sp. (strain N33)... [more]
HCDR_XANP24.731e-1125.272-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
FABG_SHIFL4.731e-1128.023-oxoacyl-[acyl-carrier-protein] reductase OS=Shig... [more]
FABG_ECOLI4.731e-1128.023-oxoacyl-[acyl-carrier-protein] reductase OS=Esch... [more]
FABG2_BRANA4.731e-1128.953-oxoacyl-[acyl-carrier-protein] reductase 2, chlo... [more]
NODG_RHIME6.179e-1127.59Nodulation protein G OS=Rhizobium meliloti GN=nodG... [more]
DHRS4_RAT6.179e-1127.07Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E22_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835481 ID=CF835481; Name=CF835481; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTTTATAAAATCGACAATAGTCGTAAGTTTTTTCAAT
ACAACATTTTAAACAAACTACAATGGTCATAAGTTTTTCCAATACTGCAG
TTTATCAAAATTCGATTGTCATAAGTTTTTCCAATACAATGTTTAAACAA
ACTTCAGCCAGAACCCTAGCAACAGAATGAGGAATACTACACTAACTCAC
ATTTTTCTAGGAACTCAAAGGGAAGAGAAAATAGGGACACCAGGAAGTGT
AGCCCCTGCATCCACAATGAACATGTTTCCTGAAACATATTTGGAAGAGT
CATGAATTAAATACCTAACAAGTGATGTCAATGCTGGATCTGAGGTGCCA
AATTCTCTTAAAGGGACGGTTTTCAAGGCAACATTATTTAGCCATTTTTT
TTGCATAAGACCTTCAGTAATCTCAGATATGAAAAGTCCAGGTGATATTG
AGTTAACTCTGATGTTGTGCACCCCCAGTTCCAATGCCATGACCTTAGTC
ATGGAATTAAGGCCTGCCTTGGAAGAAGCATAGGCAACACCTCCAGGTAA
CTGTCCACGATTAATACCAGCAATAGAAGATATGTTAATTATTGATCCTC
CCAGATTTGCATCACGCATTCGAATGCATACATACTTGGAAACCAACCAA
GATCCTGTTAAATTCGTTTTGATATTGTGATCCCACTCCTCCTCGGTCCA
ATCCAACGGACTCTTCACACTGCCTCTAACACCGGCATTATTAATCAAAA
CATCGATTCGCCAGAAGGCTTCCCAAGCCTTCTGTACGGAACTCTCAAT
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