CF835482

Overview
NameCF835482
Unique NameCF835482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_STAAC (3-oxoacyl-[acyl-carrier-protein] reductase OS=Staphylococcus aureus (strain COL) GN=fabG PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 66/216 (30.56%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLI-VAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQL--PGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +VTGAS G+GR   L LA  G  + V  A   ++ +++ +EI K   + + A++ +V AD   +++ +++    F  +DVL+NNAG+       +   E+EWD  I TNL G      + CI+                     G +  PG   Y ++KAG+  +TK  A EL    I VN+++PG  +S++T+ L  +  L    L  +PL  FG
Sbjct:    8 LVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEI-KAKGVDSFAIQANV-ADADEVKAMIKEVVSQFGSLDVLVNNAGITRD-NLLMRMKEQEWDDVIDTNLKGV-----FNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDE--LKEQMLTQIPLARFG 213          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: UCPA_SALTY (Oxidoreductase ucpA OS=Salmonella typhimurium GN=ucpA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 74/234 (31.62%), Postives = 115/234 (49.15%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVC---IRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQ-------KKWLNNVALKTVPLREFGTSDP 674
            ++     ++TGAS G+G       AR G  ++      D ++ L DE+      R  AV+ DV  D A+++++V +A E   RID+L+NNAGV   + + LD +EE+ D +I  N+ G W V+K V    I+ +D                     PG  AYA SKA +  +TK +A+E     IRVN+I PG   + + E + +       +  L  +A K +PLR    +DP
Sbjct:    3 KLTGKTALITGASQGIGEGIARVFARHGANLILLDI-SDEIEKLADELGGRGH-RCTAVKADV-RDFASVQAAVARAKETEGRIDILVNNAGVC-RLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVAD-----PGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESVLTEMA-KAIPLRRL--ADP 224          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: UCPA_SALTI (Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 74/234 (31.62%), Postives = 115/234 (49.15%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVC---IRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQ-------KKWLNNVALKTVPLREFGTSDP 674
            ++     ++TGAS G+G       AR G  ++      D ++ L DE+      R  AV+ DV  D A+++++V +A E   RID+L+NNAGV   + + LD +EE+ D +I  N+ G W V+K V    I+ +D                     PG  AYA SKA +  +TK +A+E     IRVN+I PG   + + E + +       +  L  +A K +PLR    +DP
Sbjct:    3 KLTGKTALITGASQGIGEGIARVFARHGANLILLDI-SDEIEKLADELGGRGH-RCTAVKADV-RDFASVQAAVARAKETEGRIDILVNNAGVC-RLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVAD-----PGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESVLTEMA-KAIPLRRL--ADP 224          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_CUPLA (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 65/221 (29.41%), Postives = 108/221 (48.87%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGC-LIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVC-IRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +   VV+VTGAS G+G+   L L +AGC ++V  AR     + +  EI      +A+    DV  +   +E+ ++ A +A+  +D+L+NNAG+       +   + +W   I  NLTG +L ++    I M+                   GQ      Y+++KAG+   TK +A E    NI VN+++PG   S++T  L     +N   L+T+PL  +G
Sbjct:   75 VESPVVIVTGASRGIGKAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGG-QALTFGGDVSKE-EDVEAMIKTAVDAWGTVDILVNNAGITRDGLL-MRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNAGQ----ANYSAAKAGVIGFTKTVAREYASRNINVNAVAPGFISSDMTSKLGDD--INKKILETIPLGRYG 286          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DHGB_BACME (Glucose 1-dehydrogenase B OS=Bacillus megaterium GN=gdhB PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.719e-16
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPG-DRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPG 572
            ++   VV++TG+S+GLG+   +  A     +V   R   D   S+ +E  K     A+AV+ DV  +   I + VQ A + F ++DV+INNAG+   V S  + +  +W+  I TNLTG++L S+   I+                    +   P  V YA+SK G+  MT+ +ALE     IRVN+I PG
Sbjct:    4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEEIKKVGGEAIAVKGDVTVESDVI-NLVQSAIKEFGKLDVMINNAGMENPVSSH-EMSLSDWNKVIDTNLTGAFLGSREA-IKYFVENDIKGTVINMSSVHEWKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPG 191          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DHG_BACME (Glucose 1-dehydrogenase OS=Bacillus megaterium PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPG-DRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPG 572
            ++   VV++TG+S+GLG+   +  A     +V   R   D   S+ +EI K     A+AV+ DV  +   I + VQ A + F ++DV+INNAG+   V S  + +  +W+  I TNLTG++L S+       +                 +   P  V YA+SK G+  MT+ +ALE     IRVN+I PG
Sbjct:    4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVI-NLVQSAIKEFGKLDVMINNAGLENPVSSH-EMSLSDWNKVIDTNLTGAFLGSREAIKYFVE--NDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPG 189          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_BUCAP (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=fabG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 64/224 (28.57%), Postives = 111/224 (49.55%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRM-RDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSD 671
            +I     +VTGA+ GLG+E  + L++ G  ++  +   D +K+    INK          LD+  D  +I   +++  +  + ID+LINNAG+  S    +  + +EW++ IK NLT  + +SK V   M +                  RGQ    + Y++SK+GL    K +ALE+    I VN +SPG   + +T+ L   ++  +  L  +P++  GT++
Sbjct:    2 KIEKKTALVTGANQGLGKEIAIKLSQKGIQVIGTSTTVDGVKT----INKYLKKNGFGFILDL-KDTDSILEKMKEICQKKYSIDILINNAGIT-SDNLLVYMSNKEWENVIKINLTSVFYMSKSVIRSMIKKRYGRIVTIGSVIGYLGNRGQ----INYSASKSGLIGFHKSLALEVAQKGITVNIVSPGFIKTNLTKNLNVFQYKKH--LSKIPMKRIGTAE 213          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG3_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplastic OS=Brassica napus GN=bkr3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 69/225 (30.67%), Postives = 109/225 (48.44%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGC-LIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVC-IRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGL---MQKKWLNNVALKTVPLREFG 662
            ++   VV+VTGAS G+G+   L L +AGC ++V  AR     + +  +I      +A+    DV  + A +E+ ++ A +A+  IDV++NNAG+       +   + +WD  I  NLTG +L ++    I M+                   GQ      YA++KAG+   +K  A E    NI VN + PG   S++T  L   M+KK      L T+PL  +G
Sbjct:   69 KVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEAYGG-QAITFGGDVSKE-ADVEAMMKTAIDAWGTIDVVVNNAGITRDTLL-IRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQ----ANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKK-----ILGTIPLGRYG 281          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG1_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic OS=Brassica napus GN=gbkr1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 69/225 (30.67%), Postives = 109/225 (48.44%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGC-LIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVC-IRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGL---MQKKWLNNVALKTVPLREFG 662
            ++   VV+VTGAS G+G+   L L +AGC ++V  AR     + +  +I      +A+    DV  + A +E+ ++ A +A+  IDV++NNAG+       +   + +WD  I  NLTG +L ++    I M+                   GQ      YA++KAG+   +K  A E    NI VN + PG   S++T  L   M+KK      L T+PL  +G
Sbjct:   74 KVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEAYGG-QAITFGGDVSKE-ADVEAMMKTAIDAWGTIDVVVNNAGITRDTLL-IRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQ----ANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKK-----ILGTIPLGRYG 286          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: PHBB_RALEH (Acetoacetyl-CoA reductase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 64/219 (29.22%), Postives = 99/219 (45.21%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +   +  VTG   G+G   C  LA+ G  +VA   P    +    E  K      +A E +V AD  + +++  K       +DVLINNAG+   V      T  +WD  I TNLT  + V+K V   M D                 +GQ  G   Y+++KAGL+  T  +A E+    + VN++SPG   +++ + + Q      VA  T+P++  G
Sbjct:    1 MTQRIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFDFIASEGNV-ADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVVFR-KMTRADWDAVIDTNLTSLFNVTKQVIDGMADRGWGRIVNISSVNGQ--KGQF-GQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQDVLDKIVA--TIPVKRLG 212          
The following BLAST results are available for this feature:
BLAST of CF835482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
FABG_STAAC1.156e-1730.563-oxoacyl-[acyl-carrier-protein] reductase OS=Stap... [more]
UCPA_SALTY2.575e-1731.62Oxidoreductase ucpA OS=Salmonella typhimurium GN=u... [more]
UCPA_SALTI2.575e-1731.62Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE... [more]
FABG_CUPLA2.180e-1629.413-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
DHGB_BACME3.719e-1632.98Glucose 1-dehydrogenase B OS=Bacillus megaterium G... [more]
DHG_BACME6.343e-1632.98Glucose 1-dehydrogenase OS=Bacillus megaterium PE=... [more]
FABG_BUCAP1.413e-1528.573-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
FABG3_BRANA1.413e-1530.673-oxoacyl-[acyl-carrier-protein] reductase 3, chlo... [more]
FABG1_BRANA1.413e-1530.673-oxoacyl-[acyl-carrier-protein] reductase 1, chlo... [more]
PHBB_RALEH1.846e-1529.22Acetoacetyl-CoA reductase OS=Ralstonia eutropha (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835482 ID=CF835482; Name=CF835482; organism=Citrus sinensis; type=EST; length=683bp
GCGAAATTAACGACAATGTGGTAATGGTGACCGGCGCATCCTCTGGTTTA
GGCCGAGAATTTTGTCTCGACCTCGCCAGAGCCGGCTGCCTGATCGTAGC
CGCGGCACGGCCCGGCGACCGCCTCAAGTCTCTCTGCGACGAGATCAATA
AGCCGAGCAGTATTAGAGCCGTGGCCGTAGAGCTAGACGTATGCGCCGAC
GGCGCCGCCATTGAGAGTTCCGTACAGAAGGCTTGGGAAGCCTTCTGGCG
AATCGATGTTTTGATTAATAATGCCGGTGTTAGAGGCAGTGTGAAGAGTC
CGTTGGATTGGACCGAGGAGGAGTGGGATCACAATATCAAAACGAATTTA
ACAGGATCTTGGTTGGTTTCCAAGTATGTATGCATTCGAATGCGTGATGC
AAATCTGGGAGGATCAATAATTAACATATCTTCTATTGCTGGTATTAATC
GTGGACAGTTACCTGGAGGTGTTGCCTATGCTTCTTCCAAGGCAGGCCTT
AATTCCATGACTAAGGTCATGGCATTGGAACTGGGGGTGCACAACATCAG
AGTTAACTCAATATCACCTGGACTTTTCATATCTGAGATTACTGAAGGTC
TTATGCAAAAAAAATGGCTAAATAATGTTGCCTTGAAAACCGTCCCTTTA
AGAGAATTTGGCACCTCAGATCCAGCATTGACA
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