CF835482

Overview
NameCF835482
Unique NameCF835482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_HAEIN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Haemophilus influenzae GN=fabG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 49/199 (24.62%), Postives = 94/199 (47.24%), Query Frame = 3
Query:   18 VVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKK 614
            + +VTG++ G+GR    +L+  G  ++  A      +++   +      +   + L+V  D  +IE+ +++    F  ID+L+NNAG+       +   +EEW   ++TNLT  + +SK +   +R                      PG   Y ++KAG+   +K +A E+    I VN ++PG   +++TE L  ++
Sbjct:    5 IALVTGSTRGIGRAIAEELSSKGAFVIGTATSEKGAEAISAYLGD----KGKGLVLNV-TDKESIETLLEQIKNDFGDIDILVNNAGITRD-NLLMRMKDEEWFDIMQTNLTSVYHLSKAM---LRSMMKKRFGRIINIGSVVGSTGNPGQTNYCAAKAGVVGFSKSLAKEVAARGITVNVVAPGFIATDMTEVLTDEQ 194          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 59/219 (26.94%), Postives = 91/219 (41.55%), Query Frame = 3
Query:   12 DNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAI--ESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            + V +VT ++ G+G      LA+ G  +V ++R    +    D          ++V   VC  G A   E  V  A      ID+L++NA V       +D TEE WD  +  N+    L++K V   M                        G   Y  SK  L  +TK +ALEL   NIRVN ++PGL  +  ++ L + K      ++ + +R  G
Sbjct:   14 NKVAIVTASTDGIGLAIARRLAQDGAHVVISSRKQQNV----DRAVAALQAEGLSVTGTVCHVGKAEDRERLVATALNLHGGIDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAF---NPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKALWEDKAQEENIIQKLRIRRLG 225          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DER_CHICK (D-erythrulose reductase OS=Gallus gallus GN=DER PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 59/216 (27.31%), Postives = 99/216 (45.83%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSD 671
            +VTGA  G+GR   + L +AG  + A +R    L+SL  E      I  + ++L   AD  A E++V  A       ++L+NNA V   ++  L  T E  + +   N      VS+ V  +M                   +  L     Y S+K+ L+ ++KVMA+ELG H IRVN+++P + ++++          +   +  +PL +F   D
Sbjct:   13 LVTGAGKGIGRAVAVALCKAGARVTALSRTAADLESLVREC---PGIEPLCLDL---ADWDATEAAVGAAGP----FELLVNNAAV-AMLQPFLQVTREAVERSFDVNFRAVLHVSQIVARQM--IAQGLPGAIVNVSSQASQRALRDHAVYCSTKSALDMLSKVMAMELGPHKIRVNTVNPTVVMTDMGRINWSDPQKSAAMINRIPLGKFAEVD 215          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: Y484_MYCTU (Uncharacterized oxidoreductase Rv0484c/MT0502 OS=Mycobacterium tuberculosis GN=Rv0484c PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 55/192 (28.65%), Postives = 88/192 (45.83%), Query Frame = 3
Query:   18 VVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEIT 593
            V +VTGASSG+G      LA  G  +VA AR  DR+ +L ++I         A+  DV  D AA+E+  +    A  R+DVL+NNAG    ++   D   E W     TN+ G+  V++ +  ++ D                      GG  Y ++K    ++ + +  EL    +R+  I+PG   +E +
Sbjct:   10 VAVVTGASSGIGEATARTLAAQGFHVVAVARRADRITALANQIG------GTAIVADV-TDDAAVEALAR----ALSRVDVLVNNAGGAKGLQFVADADLEHWRWMWDTNVLGTLRVTRALLPKLIDSGDGLIVTVTSIAAIEV---YDGGAGYTAAKHAQGALHRTLRGELLGKPVRLTEIAPGAVETEFS 187          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FOX2_CANTR (Peroxisomal hydratase-dehydrogenase-epimerase OS=Candida tropicalis PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 55/188 (29.26%), Postives = 94/188 (50.00%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISP 569
            + D VV++TGA +GLG+E+    A+ G  +V      D  K++ DEI K +   A   + DV  D  AI   ++   + +  ID+L+NNAG+    +S    +++EWD   + +L G++ +S+       +                      G   Y+SSKAG+  ++K MA+E   +NI+VN ++P
Sbjct:  320 LKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK-DATKTV-DEI-KAAGGEAWPDQHDVAKDSEAI---IKNVIDKYGTIDILVNNAGILRD-RSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNF---GQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAP 497          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_RICPR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia prowazekii GN=fabG PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 51/220 (23.18%), Postives = 100/220 (45.45%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            ++     ++TGASSG+G      L + G  ++ +    ++LKSL + +    +I       +VC    A +            +D+L+ NAG+     + +   ++++D  I  NL  ++++++    +M                       PG   Y +SKAGL  MTK ++ E+    I VN+++PG   S++T+ L +K+      ++ +PL  +G
Sbjct:    3 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTI-------EVC--NLANKEECSNLISKTSNLDILVCNAGITSDTLA-IRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGN---PGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQ--REAIVQKIPLGTYG 207          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_CHLPN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia pneumoniae GN=fabG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 58/220 (26.36%), Postives = 101/220 (45.91%), Query Frame = 3
Query:   21 VMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGL---MQKKWLNNVALKTVPLREFGTSD 671
            V+VTG S G+G          G  +       +R +++ + +       + A  +DV  +G  ++  VQK  +   +ID+L+NNAG+       +  +E++W   I TNLT  +     V   +R                  +    G   YA++KAG+ + TK +A E+   NIRVN ++PG   +++T  L   ++ +W     LK++PL   GT +
Sbjct:   10 VIVTGGSRGIGLGIVKLFLENGADVEIWGLNEERGQAVIESLTGLGGEVSFA-RVDVSHNGG-VKDCVQKFLDKHNKIDILVNNAGITRD-NLLMRMSEDDWQSVISTNLTSLYYTCSSV---IRHMIKARSGSIINVASIVAKIGSAGQTNYAAAKAGIIAFTKSLAKEVAARNIRVNCLAPGFIETDMTSVLNDNLKAEW-----LKSIPLGRAGTPE 218          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 57/224 (25.45%), Postives = 95/224 (42.41%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAI--ESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSD 671
            + + V +VT ++ G+G      LA+ G  +V ++R  + +    D          ++V   VC  G A   E  V  A      +D+L++NA V     + +D TEE WD  +  N+  + L++K V   M                       P    Y  SK  L  +TK +A+EL   NIRVN ++PGL  +  ++ L   K       +++ +R  G  +
Sbjct:   12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENV----DRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHP---FPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPE 228          
The following BLAST results are available for this feature:
BLAST of CF835482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
FABG_HAEIN4.704e-1124.623-oxoacyl-[acyl-carrier-protein] reductase OS=Haem... [more]
DHRS4_RABIT4.704e-1126.94Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
DER_CHICK4.704e-1127.31D-erythrulose reductase OS=Gallus gallus GN=DER PE... [more]
Y484_MYCTU6.144e-1128.65Uncharacterized oxidoreductase Rv0484c/MT0502 OS=M... [more]
FOX2_CANTR6.144e-1129.26Peroxisomal hydratase-dehydrogenase-epimerase OS=C... [more]
FABG_RICPR6.144e-1123.183-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
FABG_CHLPN8.024e-1126.363-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
DHRS4_PIG8.024e-1125.45Dehydrogenase/reductase SDR family member 4 OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835482 ID=CF835482; Name=CF835482; organism=Citrus sinensis; type=EST; length=683bp
GCGAAATTAACGACAATGTGGTAATGGTGACCGGCGCATCCTCTGGTTTA
GGCCGAGAATTTTGTCTCGACCTCGCCAGAGCCGGCTGCCTGATCGTAGC
CGCGGCACGGCCCGGCGACCGCCTCAAGTCTCTCTGCGACGAGATCAATA
AGCCGAGCAGTATTAGAGCCGTGGCCGTAGAGCTAGACGTATGCGCCGAC
GGCGCCGCCATTGAGAGTTCCGTACAGAAGGCTTGGGAAGCCTTCTGGCG
AATCGATGTTTTGATTAATAATGCCGGTGTTAGAGGCAGTGTGAAGAGTC
CGTTGGATTGGACCGAGGAGGAGTGGGATCACAATATCAAAACGAATTTA
ACAGGATCTTGGTTGGTTTCCAAGTATGTATGCATTCGAATGCGTGATGC
AAATCTGGGAGGATCAATAATTAACATATCTTCTATTGCTGGTATTAATC
GTGGACAGTTACCTGGAGGTGTTGCCTATGCTTCTTCCAAGGCAGGCCTT
AATTCCATGACTAAGGTCATGGCATTGGAACTGGGGGTGCACAACATCAG
AGTTAACTCAATATCACCTGGACTTTTCATATCTGAGATTACTGAAGGTC
TTATGCAAAAAAAATGGCTAAATAATGTTGCCTTGAAAACCGTCCCTTTA
AGAGAATTTGGCACCTCAGATCCAGCATTGACA
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