CF835482

Overview
NameCF835482
Unique NameCF835482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 58/203 (28.57%), Postives = 97/203 (47.78%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADG---AAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLM 605
            +ND VV+VTG + G+G   C  LAR G  +  +    +       EI +    +A  + LDV  +     A+++ + ++     R+D L+NNAG+  ++K   D + EEWD   + N+   +L ++ V   MR                      PG  AY +SK  +   TK  A++L   NIRVNS+ PG+  + +T+ ++
Sbjct:    4 VNDKVVLVTGGAMGMGLTHCTLLAREGATVYLSDMNEELGHQAVAEIRRQGG-KAHFLHLDVTNENHWTGAVDTILAESD----RLDALVNNAGIL-TLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGA---PGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQIL 197          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 58/203 (28.57%), Postives = 97/203 (47.78%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADG---AAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLM 605
            +ND VV+VTG + G+G   C  LAR G  +  +    +       EI +    +A  + LDV  +     A+++ + ++     R+D L+NNAG+  ++K   D + EEWD   + N+   +L ++ V   MR                      PG  AY +SK  +   TK  A++L   NIRVNS+ PG+  + +T+ ++
Sbjct:    4 VNDKVVLVTGGAMGMGLTHCTLLAREGATVYLSDMNEELGHQAVAEIRRQGG-KAHFLHLDVTNENHWTGAVDTILAESD----RLDALVNNAGIL-TLKPVQDTSNEEWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGA---PGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQIL 197          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: CBR2_PIG (Carbonyl reductase [NADPH] 2 OS=Sus scrofa GN=CBR2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 66/213 (30.99%), Postives = 99/213 (46.48%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSP-LDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREF 659
            +VTGA  G+GR+    L  +G  +VA  R    L SL  E      I  V V+L    D  A E    +A      +D+L+NNA V  ++  P LD T+E +D +   NL   + VS+ V   M +                     PG  AY+S+K  +  +TK MA+ELG H IRVNS++P + ++ +   +     L     +  P+R+F
Sbjct:   11 LVTGAGKGIGRDTVKALHVSGARVVAVTRTNGDLVSLSQEC---PGIEPVCVDL---GDWEATE----RALGGVGPVDLLVNNAAV--ALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVARSMIERGVPGSIVNVSSMVSHVT--YPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPTVVLTAMGRSVTSDPELARKLKERHPMRKF 209          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: PECR_HUMAN (Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sapiens GN=PECR PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 53/198 (26.77%), Postives = 98/198 (49.49%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEI--NKPSSIRAVAVELDV-CADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDW-TEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISE 587
            +   V +VTG ++G+G+    +L   G  +V A+R  +RLKS  DE+  N P + +A  + +     +   + + V+   + F +I+ L+NN G  G   SP +  + + W   ++TNLTG++    Y+C  +                   +   P  V   +++AG+ ++TK +ALE     IR+N ++PG+  S+
Sbjct:   16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGG--GQFLSPAEHISSKGWHAVLETNLTGTF----YMCKAVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQ 207          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DCXR_RAT (L-xylulose reductase OS=Rattus norvegicus GN=Dcxr PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 65/212 (30.66%), Postives = 97/212 (45.75%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREF 659
            +VTGA  G+GR   L L  AG  +VA +R  + L SL  E      +  V V+L   AD  A E ++         +D+L+NNA V  +++  L+ T+E  D +   N      VS+ V   M                   +  L     Y S+K  L+ +TKVMALELG H IRVN+++P + ++ +            V L  +PL +F
Sbjct:   11 LVTGAGKGIGRSTVLALQAAGAQVVAVSRTREDLDSLVREC---PGVEPVCVDL---ADWEATEQALSNVGP----VDLLVNNAAV-ATLQPFLEVTKEACDTSFNVNFRAVVQVSQIVARGM--IARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTPMGRANWSDPHKAKVMLDRIPLGKF 209          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: Y4MP_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4mP OS=Rhizobium sp. (strain NGR234) GN=NGR_a02430 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 60/221 (27.15%), Postives = 103/221 (46.61%), Query Frame = 3
Query:    6 INDNVVMVTGASS--GLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +     +++GA+S  G+GR      A  G  +       D  K+   ++        + +  DV AD A+  S+  +   AF   ++LINNAG+   VK+ LD ++ +W   +  N+TG   +S+     MR                   G + GG  Y+++KAG+  + K MA E G  +IRVN ++PGL  ++IT   +  +   ++ +K +PL   G
Sbjct:    3 LKGKTAVISGAASKRGIGRATAELFASHGARVAILDINADEAKAAAGDLPPVEHGAHIGLRCDV-ADRASCTSASDEVLSAFGVANILINNAGITQPVKT-LDISDADWQRIVAVNMTGVLNLSQVFIPNMRQNGGGSIACMSSVSAQRGGG-IFGGPHYSAAKAGVLGLAKAMAREFGPDSIRVNCVTPGLIQTDITGDKLSAEMRADI-VKGIPLSRLG 219          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: NODG_AZOBR (Nodulation protein G OS=Azospirillum brasilense GN=nodG PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 58/223 (26.01%), Postives = 104/223 (46.64%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGV-RGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSD 671
            ++  + +VTGA  GLG   C  LA+ GC++ A   P     +      +    +    E DV +D  + ++ V K       +D+L+NNAG+ R    + +D  + +WD  I TNL+  + V++ V  +M +                 +GQ  G   Y+++KAG+   TK +A EL    + VN+I+PG   +++   + +   +      +VP++  G  D
Sbjct:    1 MSQKIALVTGAMGGLGTAICQALAKDGCIVAANCLPNFEPAAAWLGQQEALGFKFYVAEGDV-SDFESCKAMVAKIEADLGPVDILVNNAGITRDKFFAKMD--KAQWDAVIATNLSSLFNVTQQVSPKMAE--RGWGRIINISSVNGVKGQ-AGQTNYSAAKAGVIGFTKALAAELATKGVTVNAIAPGYIGTDMVMAIRED--IRQAITDSVPMKRLGRPD 215          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_PSEAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=fabG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 53/222 (23.87%), Postives = 103/222 (46.40%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTSD 671
            +   V +VTGAS G+G+   L+L R G +++  A      + + + + K + +    + LDV +D  ++ ++++   +   +  +++NNAG+       +   ++EW   + TNL   + +SK V   M                        G   YA++KAGL   T+ +A E+G   I VN+++PG   +++T  L + +      L  +PL   G ++
Sbjct:    3 LQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETL-KANGVEGAGLVLDVSSD-ESVAATLEHIQQHLGQPLIVVNNAGITRD-NLLVRMKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNA---GQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQ--REALLGQIPLGRLGQAE 216          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DCXR_MESAU (L-xylulose reductase OS=Mesocricetus auratus GN=DCXR PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 65/212 (30.66%), Postives = 97/212 (45.75%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREF 659
            +VTGA  G+GR   L L  AG  +VA +R    L SL  E      +  V V+L   AD  A E ++         +D+L+NNA V   ++  L+ T+E +D +   NL     VS+ V   M                   +  L     Y S+K  L+ +TK+MALELG H IRVN+++P + ++ +            V L  +PL +F
Sbjct:   11 LVTGAGKGIGRSTVLALQAAGAHVVAVSRTQADLDSLVSEC---PGVETVCVDL---ADWEATEQALSSVGP----VDLLVNNAAV-ALLQPFLEVTKEAFDMSFNVNLRAVIQVSQIVARGM--IARGAPGAIVNVSSQASQRALANHSVYCSTKGALDMLTKMMALELGPHKIRVNAVNPTVVMTSMGRTNWSDPHKAKVMLDRIPLGKF 209          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 59/190 (31.05%), Postives = 90/190 (47.37%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPG 572
            ++ D VV+VTG S GLGR   +   +    +V   R  +       +  + +  +A+ V  DV  +   + + V+ A + F  +DV+INNAGV   V S  + + E W+  I TNLTG++L S+       +                     P  V YA+SK G+  MT+ +ALE     IRVN+I PG
Sbjct:    4 DLKDKVVVVTGGSKGLGRAMAVRFGQEQSKVVVNYRSNEEEALEVKKEIEEAGGQAIIVRGDVTKEEDVV-NLVETAVKEFGSLDVMINNAGVENPVPSH-ELSLENWNQVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMI--PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPG 189          
The following BLAST results are available for this feature:
BLAST of CF835482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
CPNA_COMTE2.041e-1428.57Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS92.041e-1428.57Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]
CBR2_PIG2.665e-1430.99Carbonyl reductase [NADPH] 2 OS=Sus scrofa GN=CBR2... [more]
PECR_HUMAN4.546e-1426.77Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sa... [more]
DCXR_RAT4.546e-1430.66L-xylulose reductase OS=Rattus norvegicus GN=Dcxr ... [more]
Y4MP_RHISN5.937e-1427.15Uncharacterized short-chain type dehydrogenase/red... [more]
NODG_AZOBR7.754e-1426.01Nodulation protein G OS=Azospirillum brasilense GN... [more]
FABG_PSEAE1.013e-1323.873-oxoacyl-[acyl-carrier-protein] reductase OS=Pseu... [more]
DCXR_MESAU1.323e-1330.66L-xylulose reductase OS=Mesocricetus auratus GN=DC... [more]
DHG2_BACME1.727e-1331.05Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835482 ID=CF835482; Name=CF835482; organism=Citrus sinensis; type=EST; length=683bp
GCGAAATTAACGACAATGTGGTAATGGTGACCGGCGCATCCTCTGGTTTA
GGCCGAGAATTTTGTCTCGACCTCGCCAGAGCCGGCTGCCTGATCGTAGC
CGCGGCACGGCCCGGCGACCGCCTCAAGTCTCTCTGCGACGAGATCAATA
AGCCGAGCAGTATTAGAGCCGTGGCCGTAGAGCTAGACGTATGCGCCGAC
GGCGCCGCCATTGAGAGTTCCGTACAGAAGGCTTGGGAAGCCTTCTGGCG
AATCGATGTTTTGATTAATAATGCCGGTGTTAGAGGCAGTGTGAAGAGTC
CGTTGGATTGGACCGAGGAGGAGTGGGATCACAATATCAAAACGAATTTA
ACAGGATCTTGGTTGGTTTCCAAGTATGTATGCATTCGAATGCGTGATGC
AAATCTGGGAGGATCAATAATTAACATATCTTCTATTGCTGGTATTAATC
GTGGACAGTTACCTGGAGGTGTTGCCTATGCTTCTTCCAAGGCAGGCCTT
AATTCCATGACTAAGGTCATGGCATTGGAACTGGGGGTGCACAACATCAG
AGTTAACTCAATATCACCTGGACTTTTCATATCTGAGATTACTGAAGGTC
TTATGCAAAAAAAATGGCTAAATAATGTTGCCTTGAAAACCGTCCCTTTA
AGAGAATTTGGCACCTCAGATCCAGCATTGACA
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