CF835482

Overview
NameCF835482
Unique NameCF835482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.727e-13
Identity = 60/208 (28.85%), Postives = 100/208 (48.08%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTE-EEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNN 626
            + D  V++TG +SG+G             +V A     + +++   + K ++ R   V+ D+  D AA + +V+ A   F  +DVLINNAG+   + +P+   E  +W+  ++ NLTG +L+SK+    M                      +P   AY +SK G+  +TK MA++   H IRVN + PG+    I   L +K +L N
Sbjct:    3 LTDKTVLITGGASGIGYAAVQAFLGQQANVVVADIDEAQGEAM---VRKENNDRLHFVQTDI-TDEAACQHAVESAVHTFGGLDVLINNAGIE--IVAPIHEMELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVGGLVAWPDIP---AYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGI----IDTPLNEKSFLEN 197          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 58/200 (29.00%), Postives = 100/200 (50.00%), Query Frame = 3
Query:   18 VVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGV--RGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQK 611
            VV++TGA SG+G++  +  A  G  +       ++ K    E+ K     A  +  DV  D    E  V+K  E F R+D+L+NNAG+   G+++   + +EE++D  +  N+ G +L+SKY   +M+                     +P    Y+ SKA L  +T+ +A++   + IRVN++ PG   +  +EGLM +
Sbjct:    7 VVLITGAGSGIGKKAAVMFAERGAKVAINDISEEKGKETV-ELIKSMGGEAAFIFGDVAKDA---EQIVKKTVETFGRLDILVNNAGIVPYGNIE---ETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIG---IPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCPG---TTQSEGLMAR 193          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 62/204 (30.39%), Postives = 98/204 (48.04%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPG-LFISEITEGLMQKK 614
            +   V +VTG   G+G       A  G  +V A    +      +E+ +   +    V+ DV AD  ++++ V+K  E +  +DVL+NNA V  SVKS  +   EEW+  I+ NLTG ++ S+Y    M                       P    Y++SK GL ++T  +A+ L  ++IRV SISPG +  SE  +  ++KK
Sbjct:    2 LEGKVAVVTGGGQGIGAAIAQLFAENGMKVVIA-EIDEEAGVEREEMLRERGLDVTFVKTDV-ADENSVKNMVRKTVEIYGGVDVLVNNAAVM-SVKSIFERPLEEWERVIRVNLTGPYICSRYCAEEMIKRGGGVIINIASTRAFQSE---PDTEPYSASKGGLVALTHSLAVSLSRYHIRVVSISPGWIETSEWKKKSLRKK 199          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: PHAB_ACISR (Acetoacetyl-CoA reductase OS=Acinetobacter sp. (strain RA3849) GN=phaB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 64/189 (33.86%), Postives = 95/189 (50.26%), Query Frame = 3
Query:   18 VVMVTGASSGLGREFCLDLARAGCLIVAAA--RPGDRLKS-LCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGV-RGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPG 572
            V +VTGA  G+G E C  L  AG  I+A    R  DR K  L  E  + S +R V  +L+   +  A  +++Q+A  A  R+DVL+NNAG+ R +    + +  E+W   I TNL   + V++ V  +M +                 +GQ  G   Y++SKAG+   TK +A E    NI VN ++PG
Sbjct:    6 VALVTGALGGIGSEICRQLVTAGYKIIATVVPREEDREKQWLQSEGFQDSDVRFVLTDLN---NHEAATAAIQEAIAAEGRVDVLVNNAGITRDATFKKMSY--EQWSQVIDTNLKTLFTVTQPVFNKMLE--QKSGRIVNISSVNGLKGQF-GQANYSASKAGIIGFTKALAQEGARSNICVNVVAPG 186          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_BUCAI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fabG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 59/226 (26.11%), Postives = 105/226 (46.46%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSW-LVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITE---GLMQKKWLNNVALKTVPLREFGTSD 671
            IN     +TGA+ G+G+     L + G  ++  +   D +K + D +        + ++     +  +I   +Q+ ++    ID+LINNAG++      ++    EWD  IKTNL+  + LV   +   ++                  +GQ    V Y++SK+GL    K +ALE+    I VN +SPGL  +  TE    +  +K+L+N     +P++ FG  +
Sbjct:    3 INRQTAFITGANQGIGKAIAKKLIKKGIQVIGTSTTEDGVKRINDYLEGNGFGFVLNLK-----NIDSITEKIQEIYKKKHSIDILINNAGIKED-NLLVNMKSTEWDDVIKTNLSSVFHLVKSVIRSMIKKRQGRIITIGSVIAYTGNKGQ----VNYSASKSGLIGFHKSLALEVASKGITVNIVSPGLIKTNFTEKLNSIQYQKYLSN-----IPMKRFGQKE 213          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: PECR_MOUSE (Peroxisomal trans-2-enoyl-CoA reductase OS=Mus musculus GN=Pecr PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 55/229 (24.02%), Postives = 105/229 (45.85%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEIN----KPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPL-DWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISE--ITEGLMQKKWLNNVALKTVPLREFGTSD 671
            + + V +VTG  +G+G+    +L   GC +V A+R  DRL +  DE+       SS    A++ ++  +   + + V+     + +I+ L+NN G  G   +P+ D T + W   I+TNLTG++    Y+C  + +                     P      +++ G+ ++TK MAL      +R+N ++PG   S+  +       + L  +A  ++P +  G  +
Sbjct:   16 LKNQVAVVTGGGTGIGKAVSRELLHLGCNVVIASRKLDRLTAAVDELRASLPPSSSAEVSAIQCNIRKE-EEVSNLVKSTLAKYGKINFLVNNGG--GQFMAPVEDITAKGWHAVIETNLTGTF----YMCKEVYNSWMREHGGSIVNIIVLLNNGFPTAAHTGAAREGVYNLTKSMALAWASSGVRINCVAPGTIYSQTAVDNYGEMGQTLFEMAFDSIPAKRLGVPE 237          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: CBR2_MOUSE (Carbonyl reductase [NADPH] 2 OS=Mus musculus GN=Cbr2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 63/213 (29.58%), Postives = 98/213 (46.01%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSP-LDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREF 659
            +VTGA  G+GR+    L  +G  +VA  R    L SL  E      I  V V+L    D  A E    KA      +D+L+NNA +   +  P L+ T+E +D +   NL   + VS+ V   M +                     P  + Y+S+K  +  +TK MA+ELG H IRVNS++P + ++++ + +           +  PLR+F
Sbjct:   11 LVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---PGIEPVCVDL---GDWDATE----KALGGIGPVDLLVNNAAL--VIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT--FPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKF 209          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_VIBCH (3-oxoacyl-[acyl-carrier-protein] reductase OS=Vibrio cholerae GN=fabG PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 57/219 (26.03%), Postives = 97/219 (44.29%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +   V +VTGAS G+G+     LA  G  ++  A      +++ D +       A+ V      +  +IE+ ++   + F  +D+L+NNAG+       +   EEEW   ++TNLT  + +SK V   M                        G   YA++KAG+   TK MA E+    + VN+++PG   +++T+ L  ++      L  VP    G
Sbjct:    3 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNV-----TNPESIEAVLKAITDEFGGVDILVNNAGITRD-NLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNA---GQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQ--RTATLAQVPAGRLG 210          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: YOHF_ECOLI (Uncharacterized oxidoreductase yohF OS=Escherichia coli (strain K12) GN=yohF PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 68/222 (30.63%), Postives = 105/222 (47.30%), Query Frame = 3
Query:   18 VVMVTGASSGLGREFCLDLARAGCLI-VAAARPGDRLKSLCDEINKPSSIRAVAVELDV--CADGA-AIESSVQKAWEAFWRIDVLINNAGVRGSVKSP-LDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFGTS 668
            V ++T + SG+G+E  L LA+ G  I +      +  K    E+     +RA  V+LD+    +GA A+E  +Q+      RIDVL+NNAG     K+P LD   +EW      ++ G++L S+    +M                      LP   AY ++K  L  +TK MALEL  H I VN+++PG   + +    M    +   A  ++PLR FG +
Sbjct:    4 VAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTAREVVS-HGVRAEIVQLDLGNLPEGALALEKLIQR----LGRIDVLVNNAGAM--TKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARQM--VKQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNAVAPGAIATPMNG--MDDSDVKPDAEPSIPLRRFGAT 214          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: SDR1_PICAB (Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 58/197 (29.44%), Postives = 93/197 (47.21%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIV----AAARPGDRLKSLCDEINKPSS---IRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWT-EEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPG 572
            +   V +VTGAS G+GRE  L++A  G  +V    +     + + S+ +    PSS   +RA+  + DV A+ + +      A  AF  + +++NNAGV  S    L  T +EEWD   + N  G++L S+    R+                      +P   AY +SKA +  MT+++A EL    I  N ++PG
Sbjct:   19 LGGRVAIVTGASRGIGREIALNMAEKGAKVVIHYSSNQHAAEEVASIINN-KSPSSGDGVRAIVCKADV-AEPSQVAQLFDTAEHAFGPLHIVVNNAGVTDSKYPTLAQTSDEEWDRIFQVNCKGAFLCSREAAKRV---VRGGGGRIINISSSLVAMPIPRYGAYTASKAAVEMMTRILAQELRGTQITANCVAPG 210          
The following BLAST results are available for this feature:
BLAST of CF835482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
BACC_BACSU1.727e-1328.85Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
Y325_THEMA2.256e-1329.00Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
Y019_THEMA2.256e-1330.39Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
PHAB_ACISR2.256e-1333.86Acetoacetyl-CoA reductase OS=Acinetobacter sp. (st... [more]
FABG_BUCAI2.256e-1326.113-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
PECR_MOUSE2.947e-1324.02Peroxisomal trans-2-enoyl-CoA reductase OS=Mus mus... [more]
CBR2_MOUSE2.947e-1329.58Carbonyl reductase [NADPH] 2 OS=Mus musculus GN=Cb... [more]
FABG_VIBCH3.848e-1326.033-oxoacyl-[acyl-carrier-protein] reductase OS=Vibr... [more]
YOHF_ECOLI5.026e-1330.63Uncharacterized oxidoreductase yohF OS=Escherichia... [more]
SDR1_PICAB5.026e-1329.44Short-chain type dehydrogenase/reductase OS=Picea ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01E22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835482 ID=CF835482; Name=CF835482; organism=Citrus sinensis; type=EST; length=683bp
GCGAAATTAACGACAATGTGGTAATGGTGACCGGCGCATCCTCTGGTTTA
GGCCGAGAATTTTGTCTCGACCTCGCCAGAGCCGGCTGCCTGATCGTAGC
CGCGGCACGGCCCGGCGACCGCCTCAAGTCTCTCTGCGACGAGATCAATA
AGCCGAGCAGTATTAGAGCCGTGGCCGTAGAGCTAGACGTATGCGCCGAC
GGCGCCGCCATTGAGAGTTCCGTACAGAAGGCTTGGGAAGCCTTCTGGCG
AATCGATGTTTTGATTAATAATGCCGGTGTTAGAGGCAGTGTGAAGAGTC
CGTTGGATTGGACCGAGGAGGAGTGGGATCACAATATCAAAACGAATTTA
ACAGGATCTTGGTTGGTTTCCAAGTATGTATGCATTCGAATGCGTGATGC
AAATCTGGGAGGATCAATAATTAACATATCTTCTATTGCTGGTATTAATC
GTGGACAGTTACCTGGAGGTGTTGCCTATGCTTCTTCCAAGGCAGGCCTT
AATTCCATGACTAAGGTCATGGCATTGGAACTGGGGGTGCACAACATCAG
AGTTAACTCAATATCACCTGGACTTTTCATATCTGAGATTACTGAAGGTC
TTATGCAAAAAAAATGGCTAAATAATGTTGCCTTGAAAACCGTCCCTTTA
AGAGAATTTGGCACCTCAGATCCAGCATTGACA
back to top