CF835482

Overview
NameCF835482
Unique NameCF835482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 59/208 (28.37%), Postives = 99/208 (47.60%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTE-EEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNN 626
            + D  V++TG +SG+G             +V A     + +++   I K ++ R   V  D+  D  A +++++ A + F  +DVLINNAG+   + +P+   E   W+  +  NLTG +L+SK+    M                      +P   AY +SK G+  +T+ MA++   HNIRVN + PG+    I   L +K +L N
Sbjct:    3 LTDKTVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGEAM---IRKENNDRLHFVHTDI-TDEPACQNAIRSAVDKFGGLDVLINNAGIE--IVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIP---AYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGI----IDTPLNEKSFLEN 197          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: Y2049_STAEQ (Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 53/199 (26.63%), Postives = 93/199 (46.73%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEG 599
            ++ + V +VTGASSG+G      L++ G  IV   R   RL  +  ++N P+ +    V  DV    + I+  ++   + F  ID+++N+AG   S K   D+  E+WD  I  N+ G+  V +     +                            Y ++KA ++++T+ +  EL    ++V SISPG+  + +TEG
Sbjct:    3 KVKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKV----VSADVTVK-SNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKI-TDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFE---PTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTEG 192          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: Y2036_STAES (Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 53/199 (26.63%), Postives = 93/199 (46.73%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEG 599
            ++ + V +VTGASSG+G      L++ G  IV   R   RL  +  ++N P+ +    V  DV    + I+  ++   + F  ID+++N+AG   S K   D+  E+WD  I  N+ G+  V +     +                            Y ++KA ++++T+ +  EL    ++V SISPG+  + +TEG
Sbjct:    3 KVKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKV----VSADVTVK-SNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKI-TDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFE---PTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTEG 192          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 57/190 (30.00%), Postives = 91/190 (47.89%), Query Frame = 3
Query:    3 EINDNVVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPG 572
            ++ D VV++TG S+GLGR   +   +    +V      +       +  + +  +A+ V+ DV  +   + + VQ A + F  +DV+INNAGV   V S  + + + W+  I TNLTG++L S+       +                     P  V YA+SK G+  MT+ +ALE     IRVN+I PG
Sbjct:    4 DLKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAKKEVEEAGGQAIIVQGDVTKEEDVV-NLVQTAIKEFGTLDVMINNAGVENPVPSH-ELSLDNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMI--PWPLFVHYAASKGGMKQMTETLALEYAPKGIRVNNIGPG 189          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DHB8_RAT (Estradiol 17-beta-dehydrogenase 8 OS=Rattus norvegicus GN=Hsd17b8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 62/222 (27.93%), Postives = 103/222 (46.40%), Query Frame = 3
Query:   18 VVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSI------RAVAVELDVCADGAAIESSVQKAWEAFWR-IDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            + +VTGA SG+GR   + LA  G  + A    G   +     +  P S       +  A + DV ++G A +  +++    F+R   V+++ AG+    +  L  +EE+WD  I  NL G++LV++     +                    G + G   YASSKAG+  +T+  A ELG H IR NS+ PG   + +T+ + +K  + +     +PL   G
Sbjct:   11 LALVTGAGSGIGRAISVRLAAEGAAVAACDLDGAAAQDTVRLLGNPGSEDREPRGKHAAFQADV-SEGPAAKRLLEQVQACFFRPPSVVVSCAGITRD-EFLLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIVGKV-GNI-GQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKMPEK--VKDKVTAMIPLGHMG 226          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: KDUD_ECOLI (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=kduD PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 58/222 (26.13%), Postives = 105/222 (47.30%), Query Frame = 3
Query:    6 INDNVVMVTGASSGLGREFCLDLARAGCLIVAA--ARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRG-QLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREFG 662
            +   V +VTG  +GLG+   L LA+AGC IV      P + ++ +     +  S+ A   ++D       I + + +A   F  ID+L+NNAG+    +  L+++E++WD  +  N+   + +S+                          G ++P   +Y +SK+G+  +T++MA E   HNI VN+I+PG   +  T+ L   +  +   L  +P   +G
Sbjct:    8 LEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKID------GIPALLDRAVAEFGHIDILVNNAGLIRR-EDALEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVP---SYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWG 219          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_SALTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhimurium GN=fabG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 54/195 (27.69%), Postives = 90/195 (46.15%), Query Frame = 3
Query:   18 VVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGL 602
            + +VTGAS G+GR     L   G  ++  A   +  K++ D +          + L+V  D A+IES ++     F  +D+L+NNAG+       +   ++EW+  I+TNL+  + +SK V   M                        G   YA++KAGL   +K +A E+    I VN ++PG   +++T  L
Sbjct:    7 IALVTGASRGIGRAIAETLVARGAKVIGTATSENGAKNISDYLGANGK----GLMLNV-TDPASIESVLENIRAEFGEVDILVNNAGITRD-NLLMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNA---GQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRAL 192          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: FABG_SALTI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 54/195 (27.69%), Postives = 90/195 (46.15%), Query Frame = 3
Query:   18 VVMVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGL 602
            + +VTGAS G+GR     L   G  ++  A   +  K++ D +          + L+V  D A+IES ++     F  +D+L+NNAG+       +   ++EW+  I+TNL+  + +SK V   M                        G   YA++KAGL   +K +A E+    I VN ++PG   +++T  L
Sbjct:    7 IALVTGASRGIGRAIAETLVARGAKVIGTATSENGAKNISDYLGANGK----GLMLNV-TDPASIESVLENIRAEFGEVDILVNNAGITRD-NLLMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNA---GQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRAL 192          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: DCXR_BOVIN (L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 66/212 (31.13%), Postives = 97/212 (45.75%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLIVAAARPGDRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEITEGLMQKKWLNNVALKTVPLREF 659
            +VTGA  G+GR     L  AG  +VA +R    L SL  E      +  V V+L   AD  A E    +A      +D+L+NNA V   ++  L+ T+E +D +   NL     VS+ V  R                    RG L     Y S+K  L+++TKVMA+ELG H IRVN+++P + ++ + +            L  +PL  F
Sbjct:   11 LVTGAGKGIGRSIVKALHAAGARVVAVSRTQADLDSLVREC---PGVETVCVDL---ADWEATE----QALGGVGPVDLLVNNAAV-AFLQPFLEVTKEAYDMSFSVNLRAVIQVSQIVA-RGLIARGAPGVIVNVSSQASQRG-LTNHSVYCSTKGALDTLTKVMAVELGPHKIRVNAVNPTVVMTPMGQAAWSDPQKAKAMLDRIPLGRF 209          
BLAST of CF835482 vs. ExPASy Swiss-Prot
Match: BDHA_RHIME (D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium meliloti GN=bdhA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 61/225 (27.11%), Postives = 103/225 (45.78%), Query Frame = 3
Query:   24 MVTGASSGLGREFCLDLARAGCLIVAAARPG-DRLKSLCDEINKPSSIRAVAVELDVCADGAAIESSVQKAWEAFWRIDVLINNAGVRGSVKSPLDWTEEEWDHNIKTNLTGSWLVSKYVCIRMRDXXXXXXXXXXXXXXXXXRGQLPGGVAYASSKAGLNSMTKVMALELGVHNIRVNSISPGLFISEI----------TEGLMQKKWLNNVALKTVPLREFGT 665
            ++TG++SG+G      LA+AG  IV       D ++++ DE+   SS   +    D+       +     A + F   D+L+NNAGV+  V+   D+  E+WD  I  NL+ S+   +     M+                      P   AY ++K G+  +TK +ALE+    + VNSI PG  ++ +          T G+ +++ +N V LK  P ++F T
Sbjct:    6 VITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVA-DRFGGADILVNNAGVQ-FVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVAS---PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKFIT 225          
The following BLAST results are available for this feature:
BLAST of CF835482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
BACC2_BACSU5.026e-1328.37Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
Y2049_STAEQ6.564e-1326.63Uncharacterized oxidoreductase SERP2049 OS=Staphyl... [more]
Y2036_STAES6.564e-1326.63Uncharacterized oxidoreductase SE_2036 OS=Staphylo... [more]
DHG3_BACME6.564e-1330.00Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
DHB8_RAT6.564e-1327.93Estradiol 17-beta-dehydrogenase 8 OS=Rattus norveg... [more]
KDUD_ECOLI8.573e-1326.132-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=E... [more]
FABG_SALTY8.573e-1327.693-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
FABG_SALTI8.573e-1327.693-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
DCXR_BOVIN8.573e-1331.13L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV... [more]
BDHA_RHIME8.573e-1327.11D-beta-hydroxybutyrate dehydrogenase OS=Rhizobium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835482 ID=CF835482; Name=CF835482; organism=Citrus sinensis; type=EST; length=683bp
GCGAAATTAACGACAATGTGGTAATGGTGACCGGCGCATCCTCTGGTTTA
GGCCGAGAATTTTGTCTCGACCTCGCCAGAGCCGGCTGCCTGATCGTAGC
CGCGGCACGGCCCGGCGACCGCCTCAAGTCTCTCTGCGACGAGATCAATA
AGCCGAGCAGTATTAGAGCCGTGGCCGTAGAGCTAGACGTATGCGCCGAC
GGCGCCGCCATTGAGAGTTCCGTACAGAAGGCTTGGGAAGCCTTCTGGCG
AATCGATGTTTTGATTAATAATGCCGGTGTTAGAGGCAGTGTGAAGAGTC
CGTTGGATTGGACCGAGGAGGAGTGGGATCACAATATCAAAACGAATTTA
ACAGGATCTTGGTTGGTTTCCAAGTATGTATGCATTCGAATGCGTGATGC
AAATCTGGGAGGATCAATAATTAACATATCTTCTATTGCTGGTATTAATC
GTGGACAGTTACCTGGAGGTGTTGCCTATGCTTCTTCCAAGGCAGGCCTT
AATTCCATGACTAAGGTCATGGCATTGGAACTGGGGGTGCACAACATCAG
AGTTAACTCAATATCACCTGGACTTTTCATATCTGAGATTACTGAAGGTC
TTATGCAAAAAAAATGGCTAAATAATGTTGCCTTGAAAACCGTCCCTTTA
AGAGAATTTGGCACCTCAGATCCAGCATTGACA
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