CF835484
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_CAEEL (Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6 PE=2 SV=2) HSP 1 Score: 189.889 bits (481), Expect = 1.227e-47 Identity = 101/197 (51.27%), Postives = 129/197 (65.48%), Query Frame = 1 Query: 154 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQN 735 L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +VVSPL +L+E+Q + +KE GI E L++ + KIY +L SG PS++LLYVTPE ++A+ S +H RGLL IDEAHC+S WGHDFRP Y KLSSLR P VPI+ALTATA PK+ D + L +QN Sbjct: 235 LYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVSPLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISASGRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTDARDHLKMQN 431
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_HUMAN (Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46 Identity = 94/196 (47.96%), Postives = 127/196 (64.80%), Query Frame = 1 Query: 139 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 723 H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+ +V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++ALTATA P+VQKD++ L Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQL 845
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_MOUSE (Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 6.731e-46 Identity = 93/196 (47.45%), Postives = 126/196 (64.29%), Query Frame = 1 Query: 139 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 723 H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+ +V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++ALTATA P+VQKD++ L Sbjct: 659 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATANPRVQKDILTQL 853
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_CHICK (Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 6.731e-46 Identity = 97/220 (44.09%), Postives = 136/220 (61.82%), Query Frame = 1 Query: 94 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 723 ++++S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T +K Y L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++L+ LR VP++ALTATA P+VQKD+ L Sbjct: 356 ISVKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQL 575
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_DROME (Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309 PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.958e-45 Identity = 90/191 (47.12%), Postives = 123/191 (64.40%), Query Frame = 1 Query: 166 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735 L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+SPL +L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++ F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA P+V+ D++ L L+N Sbjct: 729 LSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSARFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDILAQLNLKN 919
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: BLM_XENLA (Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.698e-45 Identity = 91/196 (46.43%), Postives = 126/196 (64.29%), Query Frame = 1 Query: 139 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 723 H KE ++K+ FG +FR QL+AI A L G DCF LMPTGGGKS+CYQ+P PG+ +V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE + A+ +S ++ ++ R LL IDEAHC+S WGHDFRP Y++L+ LR VP++ALTATA P+V+KD++ L Sbjct: 603 HSKE-MMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEKVCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMALTATANPRVKKDILNQL 797
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ_HAEIN (ATP-dependent DNA helicase recQ OS=Haemophilus influenzae GN=recQ PE=3 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43 Identity = 92/198 (46.46%), Postives = 129/198 (65.15%), Query Frame = 1 Query: 142 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735 EK + +L+ FG+ FR Q + I A L+G+D +M TG GKS+CYQIPAL G+ LV+SPLI+LM++QV L+ GI +FL+S+QT++ + ++ L SG+ L+LLYV+PE T F ++ S + +AIDEAHCIS WGHDFRP Y +L L+ PD PI+ALTATA Q+D++ L L+N Sbjct: 12 EKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQ--LKLLYVSPEKVMTNSFF----QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKN 203
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ_ECOLI (ATP-dependent DNA helicase recQ OS=Escherichia coli (strain K12) GN=recQ PE=1 SV=5) HSP 1 Score: 168.703 bits (426), Expect = 2.926e-41 Identity = 89/192 (46.35%), Postives = 123/192 (64.06%), Query Frame = 1 Query: 160 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735 ++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPLI+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+ L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA ++D++ L L + Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND 200
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ5_HUMAN (ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2) HSP 1 Score: 167.162 bits (422), Expect = 8.515e-41 Identity = 89/202 (44.06%), Postives = 126/202 (62.38%), Query Frame = 1 Query: 133 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732 P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV +L L+ Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLK 210
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ1_RAT (ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 8.515e-41 Identity = 81/191 (42.41%), Postives = 125/191 (65.45%), Query Frame = 1 Query: 163 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732 +LR F +FR QL+ + A ++ +D F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+Q++ L++ GI+ L+S+ + + ++ ++ + L+L+YVTPE + + FMS+L+K + G L VA+DE HC S WGHDFRP Y+ L L+ P++ ++ LTATA V KD + LC++ Sbjct: 82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATATNHVLKDAQKILCVE 272 The following BLAST results are available for this feature:
BLAST of CF835484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835484 ID=CF835484; Name=CF835484; organism=Citrus sinensis; type=EST; length=737bpback to top |