CF835484

Overview
NameCF835484
Unique NameCF835484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ_PASMU (ATP-dependent DNA helicase recQ OS=Pasteurella multocida GN=recQ PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.452e-40
Identity = 89/197 (45.18%), Postives = 124/197 (62.94%), Query Frame = 1
Query:  145 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735
            K+  + +L   FG+  FR  Q + I A L G+D   +M TG GKS+CYQIPAL   G+ LV+SPLI+LM++QV  L   GI  ++L+S+QT   + ++   L SG  +L+LLYV+PE   T  F   +    S   ++ VAIDEAHCIS WGHDFRP Y +L  L++  P  PI+ALTATA    ++D++  L LQ+
Sbjct:   23 KQTALDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISPLISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSG--TLKLLYVSPEKVMTTSFFHLI----SHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQDILRHLNLQS 213          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ1_MOUSE (ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.236e-40
Identity = 79/181 (43.65%), Postives = 119/181 (65.75%), Query Frame = 1
Query:  190 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL 729
            +FR  QL+ I   ++ +D F +MPTGGGKS+CYQ+PAL   G  LV+ PLI+LME+Q++ LK+ GI+   L+++ + +    ++ ++ +    L+L+YVTPE +  +  FMS+L+K +  G L  VA+DE HC S WGHDFRP Y+ L  L+   P+  ++ LTATA   V KDV + LC+
Sbjct:   91 KFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLMGLTATATNHVLKDVQKILCV 271          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: HUS2_SCHPO (ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe GN=rqh1 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.519e-40
Identity = 94/232 (40.52%), Postives = 140/232 (60.34%), Query Frame = 1
Query:   55 RILFVNKKMKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735
            R L    K K   + M S      + P  ++  ++  L+  F    FR  QL+AI   LSG+D F LMPTGGGKS+CYQ+PA+    A  G+ LV+SPL++LM++Q+  L++  I    LS  Q    + ++   L +    ++LLYVTPE  A+ G +++ LK ++ R LL  + IDEAHC+S WGHDFRP Y++L  LR+    +P +ALTATA   V+KD++ +L ++N
Sbjct:  476 RPLLGEMKDKNHKVLMPSLDDPMLSYPWSKE--VLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATANEIVKKDIINTLRMEN 705          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ_SALTY (ATP-dependent DNA helicase recQ OS=Salmonella typhimurium GN=recQ PE=3 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.606e-39
Identity = 87/192 (45.31%), Postives = 120/192 (62.50%), Query Frame = 1
Query:  160 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735
            ++L+  FG+ QFR  Q   I   LSGRDC  +MPTGGGKS+CYQIPAL   G+ +VVSPLI+LM++QV  L   G+A   L+STQ+ + + ++     +G+  +RLLY+ PE      F+  L   +      L+A+DEAHCIS WGHDFRP Y  L  LR   P +P +ALTATA    ++D++  L L +
Sbjct:   15 QVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQ--IRLLYIAPERLMLDNFLDHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDIIRLLGLND 200          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ_BACSU (Probable ATP-dependent DNA helicase recQ OS=Bacillus subtilis GN=recQ PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.606e-39
Identity = 95/193 (49.22%), Postives = 128/193 (66.32%), Query Frame = 1
Query:  163 LLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP-SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP-ILALTATAAPKVQKDVMESLCLQ 732
            LL  +FG+ +FR  Q +AI+ V   R +  C+MPTGGGKS+CYQIPAL   G  +V+SPLI+LM++QV  L+E GI   +++STQ+ Q   +IYE L+  K  + +L Y+TPE   +  F+  L+ I     + LVAIDEAHCIS WGHDFRPSYR +  L   L D P I+ALTATA P+V  D+ + L +Q
Sbjct:    8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEEAGINAAYINSTQSNQ---EIYERLNGLKEGAYKLFYITPERLTSIEFIRILQGID----VPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATPEVHDDICKQLHIQ 193          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ1_HUMAN (ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.359e-38
Identity = 74/182 (40.66%), Postives = 117/182 (64.29%), Query Frame = 1
Query:  190 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732
            +FR  QL+ I   ++G++ F +MPTGGGKS+CYQ+PAL   G  LV+ PLI+LME+Q++ LK+ GI+   L+++ + +    ++ ++ +    L+L+YVTPE +  +  FMS+L+K +       +A+DE HC S WGHDFRP Y+ L  L+   P+  ++ LTATA   V  D  + LC++
Sbjct:   91 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIE 272          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: WRN_XENLA (Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.028e-38
Identity = 86/194 (44.33%), Postives = 127/194 (65.46%), Query Frame = 1
Query:  157 VKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735
            +  L+ +FGH+ F+  Q   + +VL   RD   +M TG GKS+CYQ   +   GI +V+ PLI+LME+QV+ L+   I+  FL S Q+  V     +D+  GK  +R++Y+TPE  +    +S L+ + +R  + L+AIDEAHCIS WGHDFR +YR L SL+  LP+VPI+ALTATA+P +++D+ +SL L N
Sbjct:  478 ISCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICPLISLMEDQVLQLEMSNISSCFLGSAQSKNV----LQDVKDGK--MRVIYMTPEFCSRG--ISLLQDLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIREDITKSLNLHN 663          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ1_CAEEL (Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans GN=tag-51 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.028e-38
Identity = 86/192 (44.79%), Postives = 118/192 (61.46%), Query Frame = 1
Query:  160 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732
            K+L+  F   +FR  Q  AI AV+S  D   ++ TGGGKS+CYQ+PAL   G+ LVVSPLI+L+E+Q++ L+  GI    L++  + +   ++ + + +     RLLYVTPE L  +   M+KL+K  S G L L+AIDE HC S WGHDFR  Y  L+ L+     VPIL LTATA   V  DV + L +Q
Sbjct:  478 KILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANGLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSNVLDDVKDMLGIQ 669          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ1_PONAB (ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.955e-38
Identity = 73/182 (40.11%), Postives = 116/182 (63.74%), Query Frame = 1
Query:  190 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732
            +FR  QL+ I   ++G++ F +MPTGGGK +CYQ+PAL   G  LV+ PLI+LME+Q++ LK+ GI+   L+++ + +    ++ ++ +    L+L+YVTPE +  +  FMS+L+K +       +A+DE HC S WGHDFRP Y+ L  L+   P+  ++ LTATA   V  D  + LC++
Sbjct:   91 KFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIE 272          
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: SGS1_YEAST (ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae GN=SGS1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.811e-38
Identity = 87/222 (39.19%), Postives = 136/222 (61.26%), Query Frame = 1
Query:   88 SPLAMQSTSQTQKNKPLHEKEALVKLLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732
            S +  +S   ++ N P +     V L R H  F    FR  QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G      +V+SPLI+LM++QV  L  K I     SS  T + + + +    +G   L L+Y++PE+ +A+      + ++++ G L  + +DEAHC+S+WGHDFRP Y++L   +   PD+P++ALTATA+ +V+ D++ +L L+
Sbjct:  643 SDIVSKSNLSSKTNGPTYPWSDEV-LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTATASEQVRMDIIHNLELK 861          
The following BLAST results are available for this feature:
BLAST of CF835484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RECQ_PASMU1.452e-4045.18ATP-dependent DNA helicase recQ OS=Pasteurella mul... [more]
RECQ1_MOUSE3.236e-4043.65ATP-dependent DNA helicase Q1 OS=Mus musculus GN=R... [more]
HUS2_SCHPO5.519e-4040.52ATP-dependent DNA helicase hus2/rqh1 OS=Schizosacc... [more]
RECQ_SALTY1.606e-3945.31ATP-dependent DNA helicase recQ OS=Salmonella typh... [more]
RECQ_BACSU1.606e-3949.22Probable ATP-dependent DNA helicase recQ OS=Bacill... [more]
RECQ1_HUMAN1.359e-3840.66ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=R... [more]
WRN_XENLA3.028e-3844.33Werner syndrome ATP-dependent helicase homolog OS=... [more]
RECQ1_CAEEL3.028e-3844.79Putative ATP-dependent DNA helicase Q1 OS=Caenorha... [more]
RECQ1_PONAB3.955e-3840.11ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=R... [more]
SGS1_YEAST8.811e-3839.19ATP-dependent helicase SGS1 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01E23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835484 ID=CF835484; Name=CF835484; organism=Citrus sinensis; type=EST; length=737bp
GAGGCTCTCTCGCAGGGACTAAAATCCGTGCCTGCTTGCAAATGAAGCAA
AATTAGGATTTTATTCGTAAATAAAAAAATGAAGAAATCACCGTTGGCGA
TGCAAAGTACAAGTCAGACTCAGAAGAATAAGCCACTACACGAAAAGGAA
GCTCTCGTGAAGCTGTTGAGATGGCATTTTGGCCACGCTCAGTTTAGGGA
CAAACAGCTTGACGCAATACAAGCTGTTTTATCAGGAAGAGACTGCTTCT
GTTTGATGCCAACTGGCGGTGGAAAGTCAATGTGTTATCAAATTCCTGCA
TTGGCCAAACCTGGAATTGTACTTGTTGTTTCTCCTTTAATAGCTTTGAT
GGAAAATCAAGTCATTGGATTGAAGGAGAAAGGAATTGCTGGTGAATTTC
TCTCTTCAACTCAAACGATGCAAGTGAAAACTAAGATATATGAAGACCTT
GATTCTGGAAAACCATCCTTGAGGTTGCTATATGTAACACCAGAATTGAC
TGCAACACCTGGGTTTATGTCAAAGCTGAAGAAGATTCATTCGAGAGGGT
TGTTGAACCTTGTGGCCATTGACGAGGCACATTGCATCTCATCATGGGGC
CATGATTTTAGGCCAAGCTACCGTAAGCTCTCATCTTTGAGGAACTATCT
TCCAGATGTTCCTATATTGGCATTGACAGCAACTGCTGCTCCTAAAGTGC
AGAAGGATGTTATGGAGTCCTTGTGCTTGCAGAATCC
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