CF835484
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ_PASMU (ATP-dependent DNA helicase recQ OS=Pasteurella multocida GN=recQ PE=3 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.452e-40 Identity = 89/197 (45.18%), Postives = 124/197 (62.94%), Query Frame = 1 Query: 145 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735 K+ + +L FG+ FR Q + I A L G+D +M TG GKS+CYQIPAL G+ LV+SPLI+LM++QV L GI ++L+S+QT + ++ L SG +L+LLYV+PE T F + S ++ VAIDEAHCIS WGHDFRP Y +L L++ P PI+ALTATA ++D++ L LQ+ Sbjct: 23 KQTALDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTLVISPLISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSG--TLKLLYVSPEKVMTTSFFHLI----SHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTATADHATRQDILRHLNLQS 213
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ1_MOUSE (ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 3.236e-40 Identity = 79/181 (43.65%), Postives = 119/181 (65.75%), Query Frame = 1 Query: 190 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL 729 +FR QL+ I ++ +D F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+Q++ LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE + + FMS+L+K + G L VA+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V KDV + LC+ Sbjct: 91 KFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKSKMFMSRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLMGLTATATNHVLKDVQKILCV 271
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: HUS2_SCHPO (ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe GN=rqh1 PE=1 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 5.519e-40 Identity = 94/232 (40.52%), Postives = 140/232 (60.34%), Query Frame = 1 Query: 55 RILFVNKKMKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735 R L K K + M S + P ++ ++ L+ F FR QL+AI LSG+D F LMPTGGGKS+CYQ+PA+ A G+ LV+SPL++LM++Q+ L++ I LS Q + ++ L + ++LLYVTPE A+ G +++ LK ++ R LL + IDEAHC+S WGHDFRP Y++L LR+ +P +ALTATA V+KD++ +L ++N Sbjct: 476 RPLLGEMKDKNHKVLMPSLDDPMLSYPWSKE--VLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGLASNGAITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATANEIVKKDIINTLRMEN 705
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ_SALTY (ATP-dependent DNA helicase recQ OS=Salmonella typhimurium GN=recQ PE=3 SV=3) HSP 1 Score: 162.925 bits (411), Expect = 1.606e-39 Identity = 87/192 (45.31%), Postives = 120/192 (62.50%), Query Frame = 1 Query: 160 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735 ++L+ FG+ QFR Q I LSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPLI+LM++QV L G+A L+STQ+ + + ++ +G+ +RLLY+ PE F+ L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA ++D++ L L + Sbjct: 15 QVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQ--IRLLYIAPERLMLDNFLDHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDIIRLLGLND 200
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ_BACSU (Probable ATP-dependent DNA helicase recQ OS=Bacillus subtilis GN=recQ PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.606e-39 Identity = 95/193 (49.22%), Postives = 128/193 (66.32%), Query Frame = 1 Query: 163 LLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP-SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP-ILALTATAAPKVQKDVMESLCLQ 732 LL +FG+ +FR Q +AI+ V R + C+MPTGGGKS+CYQIPAL G +V+SPLI+LM++QV L+E GI +++STQ+ Q +IYE L+ K + +L Y+TPE + F+ L+ I + LVAIDEAHCIS WGHDFRPSYR + L L D P I+ALTATA P+V D+ + L +Q Sbjct: 8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEEAGINAAYINSTQSNQ---EIYERLNGLKEGAYKLFYITPERLTSIEFIRILQGID----VPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATPEVHDDICKQLHIQ 193
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ1_HUMAN (ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3) HSP 1 Score: 159.844 bits (403), Expect = 1.359e-38 Identity = 74/182 (40.66%), Postives = 117/182 (64.29%), Query Frame = 1 Query: 190 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732 +FR QL+ I ++G++ F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+Q++ LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE + + FMS+L+K + +A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V D + LC++ Sbjct: 91 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIE 272
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: WRN_XENLA (Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis GN=wrn PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.028e-38 Identity = 86/194 (44.33%), Postives = 127/194 (65.46%), Query Frame = 1 Query: 157 VKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN 735 + L+ +FGH+ F+ Q + +VL RD +M TG GKS+CYQ + GI +V+ PLI+LME+QV+ L+ I+ FL S Q+ V +D+ GK +R++Y+TPE + +S L+ + +R + L+AIDEAHCIS WGHDFR +YR L SL+ LP+VPI+ALTATA+P +++D+ +SL L N Sbjct: 478 ISCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVICPLISLMEDQVLQLEMSNISSCFLGSAQSKNV----LQDVKDGK--MRVIYMTPEFCSRG--ISLLQDLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIREDITKSLNLHN 663
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ1_CAEEL (Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans GN=tag-51 PE=3 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 3.028e-38 Identity = 86/192 (44.79%), Postives = 118/192 (61.46%), Query Frame = 1 Query: 160 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732 K+L+ F +FR Q AI AV+S D ++ TGGGKS+CYQ+PAL G+ LVVSPLI+L+E+Q++ L+ GI L++ + + ++ + + + RLLYVTPE L + M+KL+K S G L L+AIDE HC S WGHDFR Y L+ L+ VPIL LTATA V DV + L +Q Sbjct: 478 KILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANGLALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKSKKMMNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSNVLDDVKDMLGIQ 669
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: RECQ1_PONAB (ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.955e-38 Identity = 73/182 (40.11%), Postives = 116/182 (63.74%), Query Frame = 1 Query: 190 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732 +FR QL+ I ++G++ F +MPTGGGK +CYQ+PAL G LV+ PLI+LME+Q++ LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE + + FMS+L+K + +A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V D + LC++ Sbjct: 91 KFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIE 272
BLAST of CF835484 vs. ExPASy Swiss-Prot
Match: SGS1_YEAST (ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae GN=SGS1 PE=1 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.811e-38 Identity = 87/222 (39.19%), Postives = 136/222 (61.26%), Query Frame = 1 Query: 88 SPLAMQSTSQTQKNKPLHEKEALVKLLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ 732 S + +S ++ N P + V L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTATA+ +V+ D++ +L L+ Sbjct: 643 SDIVSKSNLSSKTNGPTYPWSDEV-LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTIVISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMISASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTATASEQVRMDIIHNLELK 861 The following BLAST results are available for this feature:
BLAST of CF835484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835484 ID=CF835484; Name=CF835484; organism=Citrus sinensis; type=EST; length=737bpback to top |