CF835501

Overview
NameCF835501
Unique NameCF835501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.257e-39
Identity = 89/143 (62.24%), Postives = 103/143 (72.03%), Query Frame = 1
Query:  190 ELEMERACSRGISDDE--DGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKL--SPQFYMQMTPPT----TLTMCPSCER 594
            E E+ER+ S G+ DD+  DG   RKKLRLSKDQ+A+LEE FK H+TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCE+LKR CE L +EN+RL+KE+ +LRALK   SP     M P +    TLTMCPSC R
Sbjct:   92 ERELERSGS-GVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRR 233          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.257e-39
Identity = 89/143 (62.24%), Postives = 103/143 (72.03%), Query Frame = 1
Query:  190 ELEMERACSRGISDDE--DGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKL--SPQFYMQMTPPT----TLTMCPSCER 594
            E E+ER+ S G+ DD+  DG   RKKLRLSKDQ+A+LEE FK H+TLNP          GLRPRQVEVWFQNRRARTKLKQTEVDCE+LKR CE L +EN+RL+KE+ +LRALK   SP     M P +    TLTMCPSC R
Sbjct:   92 ERELERSGS-GVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRR 233          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.618e-37
Identity = 84/146 (57.53%), Postives = 98/146 (67.12%), Query Frame = 1
Query:  157 GKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 594
            GKR     +GDE++ +  C  G      G  +RKKLRLSKDQ+A+LEE FK H+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKR C+ L ++NRRL KE+ ELRALK +P       P TTLTMC SC+R
Sbjct:   68 GKRGSGSGSGDEVD-DAGCDVG------GGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATPTPPAAAPPLTTLTMCLSCKR 206          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.618e-37
Identity = 84/146 (57.53%), Postives = 98/146 (67.12%), Query Frame = 1
Query:  157 GKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 594
            GKR     +GDE++ +  C  G      G  +RKKLRLSKDQ+A+LEE FK H+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKR C+ L ++NRRL KE+ ELRALK +P       P TTLTMC SC+R
Sbjct:   68 GKRGSGSGSGDEVD-DAGCDVG------GGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATPTPPAAAPPLTTLTMCLSCKR 206          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.789e-36
Identity = 92/206 (44.66%), Postives = 112/206 (54.37%), Query Frame = 1
Query:    7 FPL*IQTLSLVAPRPASFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXXGKRSEREPNGDELEMERACSRGISDDED--GDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-ALKLSPQFY--------MQMTPPTTLTMCPSCE 591
            FPL + +    +       RG DVN  P+    E                G+ S      +    ++   +  +DDED  G  +RKKLRLSK+QS+ LE+SFKEH+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKRCCE LT ENRRLQ+EV ELR AL+ +   Y        +     T   +CPSCE
Sbjct:   83 FPLFVSSAETGSANSEMCTRGFDVNTRPADGGAEA---------------GRPSSPSSMQEASTRQQVADQEAADDEDNGGGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCE 273          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSJ (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. japonica GN=HOX7 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.204e-36
Identity = 91/206 (44.17%), Postives = 111/206 (53.88%), Query Frame = 1
Query:    7 FPL*IQTLSLVAPRPASFLRGIDVNRLPSHADNEEEXXXXXXXXXXXXXXGKRSEREPNGDELEMERACSRGISDDED--GDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-ALKLSPQFY--------MQMTPPTTLTMCPSCE 591
            FPL + +    +       RG DVN  P+    E                G+ S      +    ++   +  +DDED  G  +RKKLRLSK+QS+ LE+SFKEH+TL P           LRPRQVEVWFQNRRARTKLKQTEVDCE LKRCCE LT ENRRLQ+EV ELR  L+ +   Y        +     T   +CPSCE
Sbjct:   83 FPLFVSSAETGSANSEMCTRGFDVNTRPADGGAEA---------------GRPSSPSSMQEASTRQQVADQEAADDEDNGGGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGTLRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCE 273          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34
Identity = 81/151 (53.64%), Postives = 99/151 (65.56%), Query Frame = 1
Query:  157 GKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYM-----QMTPPTTLTMCPSCER 594
            G   E  P G   E E    RG+     G    KKLRLSK+QS +LEESF+ ++TL P           LRPRQVEVWFQNRRARTKLKQTE++CE+LKRC  +LTEENRRLQ+EV+ELRA++++P   +     Q  P + LTMCP CER
Sbjct:   51 GGEEEEFPMGSVEEDEE--ERGVG----GPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCER 195          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.729e-34
Identity = 81/151 (53.64%), Postives = 99/151 (65.56%), Query Frame = 1
Query:  157 GKRSEREPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYM-----QMTPPTTLTMCPSCER 594
            G   E  P G   E E    RG+     G    KKLRLSK+QS +LEESF+ ++TL P           LRPRQVEVWFQNRRARTKLKQTE++CE+LKRC  +LTEENRRLQ+EV+ELRA++++P   +     Q  P + LTMCP CER
Sbjct:   51 GGEEEEFPMGSVEEDEE--ERGVG----GPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCER 195          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.954e-32
Identity = 74/140 (52.86%), Postives = 97/140 (69.29%), Query Frame = 1
Query:  193 LEMERACSRGISDDE-----DGDTS-RKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCER 594
            L+M R  S    DDE     DG    RKKLRL+++QS +LE+SF++++TLNP           LRPRQ+EVWFQNRRAR+KLKQTE++CE+LKR   +LTEEN RL +EV+ELRA+K+ P     +   ++LTMCP CER
Sbjct:  112 LDMNRLPSSEDGDDEEFSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGP---TTVNSASSLTMCPRCER 248          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.467e-30
Identity = 71/134 (52.99%), Postives = 87/134 (64.93%), Query Frame = 1
Query:  220 GISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR------ALKLSPQFYMQMTPPTTLTM---CPSCER 594
            G S    G  +RKKL+L+K+QS +LE+SF+ HN L+            L+PRQVEVWFQNRRARTKLKQTEVDCEFLKRCCE+LTEEN++L+ E+ ELR      A     Q Y+Q        M   CPSCE+
Sbjct:  103 GGSGSGGGGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASAAAAAAGSQLYVQFPRAAAAAMVNVCPSCEK 236          
The following BLAST results are available for this feature:
BLAST of CF835501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
HOX2_ORYSJ2.257e-3962.24Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI2.257e-3962.24Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX28_ORYSJ1.618e-3757.53Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX28_ORYSI1.618e-3757.53Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX7_ORYSI1.789e-3644.66Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX7_ORYSJ5.204e-3644.17Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX3_ORYSJ3.729e-3453.64Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX3_ORYSI3.729e-3453.64Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
ATB17_ARATH5.954e-3252.86Homeobox-leucine zipper protein ATHB-17 OS=Arabido... [more]
HOX18_ORYSI1.467e-3052.99Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01F20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835501 ID=CF835501; Name=CF835501; organism=Citrus sinensis; type=EST; length=767bp
GCCTTATTCCCCCTTTAGATCCAAACTCTGAGTCTTGTCGCGCCGAGACC
CGCATCATTTCTTAGAGGAATCGACGTGAATCGATTGCCGTCACATGCAG
ATAACGAAGAAGAAGTGGGCGTCTCATCTCCTAACAGCACGATTTCGAGC
GTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAGCTCGAAAT
GGAGAGAGCTTGCTCTCGTGGTATCAGCGACGATGAAGATGGTGACACTT
CAAGAAAGAAGCTGAGACTTTCTAAAGATCAGTCAGCCATTCTTGAAGAG
AGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGTTGGCGTTGGC
AAAGCAGCTTGGTCTCAGACCTAGACAGGTGGAAGTGTGGTTCCAGAACA
GAAGGGCAAGGACCAAATTGAAGCAAACTGAGGTTGACTGCGAATTCTTG
AAGAGATGCTGTGAGAATCTGACGGAGGAGAACAGGCGGTTGCAGAAAGA
AGTTCAGGAGCTGAGAGCACTGAAGCTTTCCCCGCAGTTCTACATGCAAA
TGACCCCACCCACAACACTTACGATGTGTCCTTCGTGTGAGCGTGTGGCA
GTCCCACCATCCGCTGCAGCATCAGCCGTTGATCCGGCTAGGCCTACTCA
TCAGATGGCTGCTCCCAATCATCACAGACCCATCCCCATCAACCCTTGGG
CCCCCGCTGCTGCCATCCCTCATGGACCCTTTGATGCACTCCGTCCTCGA
TCGTGATTGTATTCCTC
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