CF835501

Overview
NameCF835501
Unique NameCF835501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5115 contig Csv1_Contig5115:381..1147. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSI (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. indica GN=HOX21 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  232 DEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 519
            D+      KK RL+ +Q   LE++F+  N L P          GL+PRQV +WFQNRRAR K KQ E D + LKR  + +  EN  L    ++L+A
Sbjct:  116 DDGSQAGEKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQA 211          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.525e-11
Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 1
Query:  229 DDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTE-------ENRRLQKEVQEL 513
            D  D     KK RL+ +Q  +LE+SF+  N L P          GL+PRQV VWFQNRRAR K KQ E D + LK   + L         +N +L+ EV  L
Sbjct:   59 DFYDDQLPEKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSL 160          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 1
Query:  175 EPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQK-------EVQELRA 519
            E  GD  E   AC  G           KK RLS +Q   LE SF+  N L P          GL+PRQV VWFQNRRAR K KQ E D   L+   ++L  ++  L++       E++EL+A
Sbjct:   33 EAEGDVEEEMMACGGG---------GEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKA 145          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 47/122 (38.52%), Postives = 60/122 (49.18%), Query Frame = 1
Query:  175 EPNGDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQK-------EVQELRA 519
            E  GD  E   AC  G           KK RLS +Q   LE SF+  N L P          GL+PRQV VWFQNRRAR K KQ E D   L+   ++L  ++  L++       E++EL+A
Sbjct:   33 EAEGDVEEEMMACGGG---------GEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKA 145          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.601e-11
Identity = 43/112 (38.39%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  184 GDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 519
            G E EM+      +     G    KK RLS +Q   LE SF+  N L P          GL+PRQV VWFQNRRAR K KQ E D   L++  + L  ++  L+++   L A
Sbjct:   19 GVEEEMDVDEDMAMCGGRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLA 130          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.601e-11
Identity = 43/112 (38.39%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  184 GDELEMERACSRGISDDEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 519
            G E EM+      +     G    KK RLS +Q   LE SF+  N L P          GL+PRQV VWFQNRRAR K KQ E D   L++  + L  ++  L+++   L A
Sbjct:   19 GVEEEMDVDEDMAMCGGRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLA 130          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSJ (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 43/104 (41.35%), Postives = 52/104 (50.00%), Query Frame = 1
Query:  229 DDEDG-------DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 519
            D+EDG           KK RLS +Q   LE SF+  N L P          GL+PRQV +WFQNRRAR K KQ E D + L+R  +    EN  L     +L A
Sbjct:   88 DEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHA 191          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 43/104 (41.35%), Postives = 52/104 (50.00%), Query Frame = 1
Query:  229 DDEDG-------DTSRKKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRA 519
            D+EDG           KK RLS +Q   LE SF+  N L P          GL+PRQV +WFQNRRAR K KQ E D + L+R  +    EN  L     +L A
Sbjct:   88 DEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHA 191          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: ATB54_ARATH (Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  256 KKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTE-------ENRRLQKEVQELRAL 522
            KK +L+  Q  +LEESF+E   L P          GL+P QV VWFQNRRAR K KQ E DC+ LK     L         +N+ L+ +VQ L  L
Sbjct:   68 KKRKLTPIQLRLLEESFEEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEHDCDSLKASYAKLKTDWDILFVQNQTLKSKVQFLNRL 163          
BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: ATB51_ARATH (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  256 KKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRAL 522
            KK RL+  Q A LE SF+E   L+           GL+PRQ+ VWFQNRRAR K KQ E   + L++  + ++ E + L  EV++LRAL
Sbjct:   78 KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHDEVKKLRAL 166          
The following BLAST results are available for this feature:
BLAST of CF835501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
HOX21_ORYSI1.167e-1140.63Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
HAT5_ARATH1.525e-1141.18Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
HOX4_ORYSJ1.991e-1138.52Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX4_ORYSI1.991e-1138.52Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX20_ORYSJ2.601e-1138.39Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI2.601e-1138.39Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX23_ORYSJ4.436e-1141.35Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX23_ORYSI4.436e-1141.35Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
ATB54_ARATH7.567e-1142.71Homeobox-leucine zipper protein ATHB-54 OS=Arabido... [more]
ATB51_ARATH7.567e-1143.82Putative homeobox-leucine zipper protein ATHB-51 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01F20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835501 ID=CF835501; Name=CF835501; organism=Citrus sinensis; type=EST; length=767bp
GCCTTATTCCCCCTTTAGATCCAAACTCTGAGTCTTGTCGCGCCGAGACC
CGCATCATTTCTTAGAGGAATCGACGTGAATCGATTGCCGTCACATGCAG
ATAACGAAGAAGAAGTGGGCGTCTCATCTCCTAACAGCACGATTTCGAGC
GTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAGCTCGAAAT
GGAGAGAGCTTGCTCTCGTGGTATCAGCGACGATGAAGATGGTGACACTT
CAAGAAAGAAGCTGAGACTTTCTAAAGATCAGTCAGCCATTCTTGAAGAG
AGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGTTGGCGTTGGC
AAAGCAGCTTGGTCTCAGACCTAGACAGGTGGAAGTGTGGTTCCAGAACA
GAAGGGCAAGGACCAAATTGAAGCAAACTGAGGTTGACTGCGAATTCTTG
AAGAGATGCTGTGAGAATCTGACGGAGGAGAACAGGCGGTTGCAGAAAGA
AGTTCAGGAGCTGAGAGCACTGAAGCTTTCCCCGCAGTTCTACATGCAAA
TGACCCCACCCACAACACTTACGATGTGTCCTTCGTGTGAGCGTGTGGCA
GTCCCACCATCCGCTGCAGCATCAGCCGTTGATCCGGCTAGGCCTACTCA
TCAGATGGCTGCTCCCAATCATCACAGACCCATCCCCATCAACCCTTGGG
CCCCCGCTGCTGCCATCCCTCATGGACCCTTTGATGCACTCCGTCCTCGA
TCGTGATTGTATTCCTC
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