CF835501

Overview
NameCF835501
Unique NameCF835501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF835501 vs. ExPASy Swiss-Prot
Match: ATB20_ARATH (Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana GN=ATHB-20 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:  256 KKLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRL----QKEVQELRALK 525
            KK RL  +Q   LE+SF+  N L P          G++PRQ+ +WFQNRRAR K +Q E D + LK+  E+L  +N  L    +K + E+ ALK
Sbjct:   87 KKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNASLLAYNKKLLAEVMALK 180
The following BLAST results are available for this feature:
BLAST of CF835501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
ATB20_ARATH9.883e-1141.49Homeobox-leucine zipper protein ATHB-20 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01F20_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835501 ID=CF835501; Name=CF835501; organism=Citrus sinensis; type=EST; length=767bp
GCCTTATTCCCCCTTTAGATCCAAACTCTGAGTCTTGTCGCGCCGAGACC
CGCATCATTTCTTAGAGGAATCGACGTGAATCGATTGCCGTCACATGCAG
ATAACGAAGAAGAAGTGGGCGTCTCATCTCCTAACAGCACGATTTCGAGC
GTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAGCTCGAAAT
GGAGAGAGCTTGCTCTCGTGGTATCAGCGACGATGAAGATGGTGACACTT
CAAGAAAGAAGCTGAGACTTTCTAAAGATCAGTCAGCCATTCTTGAAGAG
AGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGTTGGCGTTGGC
AAAGCAGCTTGGTCTCAGACCTAGACAGGTGGAAGTGTGGTTCCAGAACA
GAAGGGCAAGGACCAAATTGAAGCAAACTGAGGTTGACTGCGAATTCTTG
AAGAGATGCTGTGAGAATCTGACGGAGGAGAACAGGCGGTTGCAGAAAGA
AGTTCAGGAGCTGAGAGCACTGAAGCTTTCCCCGCAGTTCTACATGCAAA
TGACCCCACCCACAACACTTACGATGTGTCCTTCGTGTGAGCGTGTGGCA
GTCCCACCATCCGCTGCAGCATCAGCCGTTGATCCGGCTAGGCCTACTCA
TCAGATGGCTGCTCCCAATCATCACAGACCCATCCCCATCAACCCTTGGG
CCCCCGCTGCTGCCATCCCTCATGGACCCTTTGATGCACTCCGTCCTCGA
TCGTGATTGTATTCCTC
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