CF835514

Overview
NameCF835514
Unique NameCF835514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835514_ssr703 microsatellite CF835514_ssr703:703..714. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1117 contig Csv1_Contig1117:172..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835514 vs. ExPASy Swiss-Prot
Match: GSTT3_DROME (Glutathione S-transferase D3 OS=Drosophila melanogaster GN=GstD3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 50/185 (27.03%), Postives = 90/185 (48.65%), Query Frame = 3
Query:   24 IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIP--FTHYLVGPMGRQHMIRDRKHVSAWWDDISN-RPSWKK 569
            +EF    ++ +KGEQ +P+++K+ P   +P + D  F ++ESRAI+ Y  EKY  +   L  K I+++ ++ Q L  +     P +     +   + +FG   D K V+E       T D     L    Y+AGD +++AD++ +       +VG       I    +V+ W+D +    P W++
Sbjct:    8 LEFNKKIINTLKGEQMNPDFIKINPQHSIPTLVDNGFTIWESRAILVYLVEKY-GKDDALYPKDIQKQAVINQRLYFDMALMYPTLANYYYKAFTTGQFGSEEDYKKVQE-------TFDFLNTFLEGQDYVAGDQYTVADIAILANVSNFDVVG-----FDISKYPNVARWYDHVKKITPGWEE 179          
BLAST of CF835514 vs. ExPASy Swiss-Prot
Match: GSTT4_MUSDO (Glutathione S-transferase 4 OS=Musca domestica GN=Gst4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 51/144 (35.42%), Postives = 70/144 (48.61%), Query Frame = 3
Query:   24 IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSS-KFGRPVDEKLVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLS 452
            IE     + L +G    PE+LK+ P   +P + D  F L+ESRAIM Y  EKY  Q   L     ++R L+ Q L  +       +Y+      +   K  +P D +L K    K   TLD     LS+SKY AGD  +LADL+
Sbjct:   24 IELNKKLLKLFEGGHLKPEFLKINPQHTIPTLVDNGFALWESRAIMVYLVEKYGKQDDPLYPSCPKKRALINQRLYFDM----GTLYQGFANYFYPQFKEKKPADPELFK----KFEVTLDFLNTFLSESKYAAGDSLTLADLA 159          
BLAST of CF835514 vs. ExPASy Swiss-Prot
Match: GSTT2_MUSDO (Glutathione S-transferase 2 OS=Musca domestica GN=Gst2 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 3
Query:   24 IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLS 452
            IE     ++L +GE   PE+LK+ P   +P + D  F ++ESRAIM Y  EKY  Q   L     ++R L+ Q L  +      +  + T      +K   P D +L K+ +  L + L+++   LS+SKY AG+  +LADL+
Sbjct:   24 IELNKKLLNLFEGEHLKPEFLKINPQHTIPTLVDNGFAMWESRAIMVYLVEKYGKQNDPLYPSCPKKRALINQRLYFDMGTLWKSYADYTYPQFRENK---PADPELFKKFESAL-EFLNIF---LSQSKYAAGETMTLADLA 159          
BLAST of CF835514 vs. ExPASy Swiss-Prot
Match: GSTZ1_DIACA (Glutathione S-transferase 1 OS=Dianthus caryophyllus GN=GST1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 52/150 (34.67%), Postives = 73/150 (48.67%), Query Frame = 3
Query:   18 KEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLS--KSKYLAGDFFSLADLSHIP 461
            K ++FE   VDL KGE  +PE+LKL P G +PV+  GD ++ +S AI+ Y  EK+      LL + +++R L  Q   +   N  P +  L +      K G   DEKL   +   + K     E+ L     KY  GD   LADL   P
Sbjct:   30 KGLDFEYKAVDLFKGEHLTPEFLKLNPLGYVPVLVHGDIVIADSLAIIMYLEEKFPE--NPLLPQDLQKRALNYQAANIVTSNIQP-LQNLAVLNYIEEKLGS--DEKL-SWAKHHIKKGFSALEKLLKGHAGKYATGDEVGLADLFLAP 173          
BLAST of CF835514 vs. ExPASy Swiss-Prot
Match: GSTT3_MUSDO (Glutathione S-transferase 3 OS=Musca domestica GN=Gst3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 3
Query:   24 IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLS 452
            IE     ++L +GE   PE+LK+ P   +P + D  F ++ESRAIM Y  EKY  Q   L     ++R L+ Q L  +      +  + T      +K   P D +L K+ +  L + L+++   LS+SKY AG   +LADL+
Sbjct:   24 IELNKKLLNLFEGEHLKPEFLKINPQHTIPTLVDNGFAMWESRAIMVYLVEKYGKQNDPLYPSCPKKRALINQRLYFDMGTLWKSYADYTYPQFRENK---PADPELFKKFESAL-EFLNIF---LSQSKYAAGQTMTLADLA 159          
BLAST of CF835514 vs. ExPASy Swiss-Prot
Match: GSTT4_MOUSE (Glutathione S-transferase theta-4 OS=Mus musculus GN=Gstt4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 50/172 (29.07%), Postives = 88/172 (51.16%), Query Frame = 3
Query:   24 IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYN-PAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSK-YLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAW 533
            I F+   VDL+KG   S EY+++ P  +LP ++DG FIL ES AI+ Y   KY S  +      +  R  V++++  +      P    L I+L+     G  V  + ++++ +++ + L  +EE+  + K ++ GD  SLADL  +     ++ PMG  H +     ++ W
Sbjct:   26 IPFDFQFVDLLKGHHHSKEYIEINPLRKLPSLKDGKFILSESVAILFYLCRKY-SAPSHWYPPDLHMRARVDEFMAWQHTAIQVPMSKILWIKLIIPMITGEEVPTERLEKTLDEVKRNLQQFEEKFLQDKMFITGDHISLADLVALV---EMMQPMGSNHNVFVSSKLAEW 193          
BLAST of CF835514 vs. ExPASy Swiss-Prot
Match: GSTT4_RAT (Glutathione S-transferase theta-4 OS=Rattus norvegicus GN=Gstt4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 49/172 (28.49%), Postives = 87/172 (50.58%), Query Frame = 3
Query:   24 IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYN-PAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSK-YLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAW 533
            I F+   VDL+KG   S EY+++ P  ++P ++DG FIL ES AI+ Y   KY S  +      +  R  V++++  +      P    L I+L+     G  V  + + ++ +++ K +  +EE+  + K ++ GD  SLADL  +     ++ PMG  H +     ++ W
Sbjct:   26 IPFDFQFVDLLKGHHHSKEYIEINPLRKVPSLRDGKFILSESVAILCYLCRKY-SAPSHWYPPDLHMRARVDEFMAWQHTAIQVPMSKILWIKLIIPMITGEEVPTERLDKTLDEVNKNIKQFEEKFLQDKLFITGDHISLADLVALV---EMMQPMGTNHNVFISSKLAEW 193          
BLAST of CF835514 vs. ExPASy Swiss-Prot
Match: GSTT4_HUMAN (Glutathione S-transferase theta-4 OS=Homo sapiens GN=GSTT4 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 45/147 (30.61%), Postives = 79/147 (53.74%), Query Frame = 3
Query:   15 EKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELT-IQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSK-YLAGDFFSLADL 449
            + +I FE   VDLIKG   S EY+ + P  +LP ++DG FIL ES AI+ Y   KY S  +      +  R  V++++  +   +   + ++  ++LL     G  V  + ++ + E++  +L ++EE   + K ++ G+  SLADL
Sbjct:   23 KNDIPFELRIVDLIKGHHHSKEYIDINPLRKLPSLKDGKFILSESAAILYYLCRKY-SAPSHWCPPDLHARARVDEFVAWQHTAFQLPMKKIVWLKLLIPKITGEEVSAEKMEHAVEEVKNSLQLFEEYFLQDKMFITGNQISLADL 168          
BLAST of CF835514 vs. ExPASy Swiss-Prot
Match: GSTT1_LUCCU (Glutathione S-transferase 1-1 OS=Lucilia cuprina GN=GST1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 46/143 (32.17%), Postives = 70/143 (48.95%), Query Frame = 3
Query:   24 IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLS 452
            IE     ++L  GE   PE+LK+ P   +P + DGDF L+ESRAIM Y  EKY  +   L  K  ++R ++ Q L  +      +  +     +F+     P D +L K    K+    D     L   +Y+AGD  ++ADL+
Sbjct:   24 IELNKKLLNLQAGEHLKPEFLKINPQHTIPTLVDGDFALWESRAIMVYLVEKY-GKNDSLFPKCPKKRAVINQRLYFDMGTLYKSFADYYYPQIFAK---APADPELYK----KMEAAFDFLNTFLEGHQYVAGDSLTVADLA 158          
BLAST of CF835514 vs. ExPASy Swiss-Prot
Match: GST1D_ANOGA (Glutathione S-transferase 1, isoform D OS=Anopheles gambiae GN=GstD1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 47/143 (32.87%), Postives = 71/143 (49.65%), Query Frame = 3
Query:   24 IEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDEKLVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLS 452
            +E      DL+KGE   PE+LKL P   +P + D  F L+ESRAI  Y AEKY  +  +L  K  ++R +V Q L  +         +     +F+ +   P +EK +K++   L   L+  E       Y AG+  ++ADLS
Sbjct:   24 VELNLKLTDLMKGEHMKPEFLKLNPQHCIPTLVDNGFALWESRAIQIYLAEKY-GKDDKLYPKDPQKRAVVNQRLYFDMGTLYQRFADYHYPQIFAKQPANPENEKKMKDAVGFLNTFLEGQE-------YAAGNDLTIADLS 158          
The following BLAST results are available for this feature:
BLAST of CF835514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
GSTT3_DROME1.252e-1227.03Glutathione S-transferase D3 OS=Drosophila melanog... [more]
GSTT4_MUSDO2.789e-1235.42Glutathione S-transferase 4 OS=Musca domestica GN=... [more]
GSTT2_MUSDO2.789e-1233.57Glutathione S-transferase 2 OS=Musca domestica GN=... [more]
GSTZ1_DIACA4.757e-1234.67Glutathione S-transferase 1 OS=Dianthus caryophyll... [more]
GSTT3_MUSDO4.757e-1233.57Glutathione S-transferase 3 OS=Musca domestica GN=... [more]
GSTT4_MOUSE1.060e-1129.07Glutathione S-transferase theta-4 OS=Mus musculus ... [more]
GSTT4_RAT2.361e-1128.49Glutathione S-transferase theta-4 OS=Rattus norveg... [more]
GSTT4_HUMAN3.084e-1130.61Glutathione S-transferase theta-4 OS=Homo sapiens ... [more]
GSTT1_LUCCU5.260e-1132.17Glutathione S-transferase 1-1 OS=Lucilia cuprina G... [more]
GST1D_ANOGA6.869e-1132.87Glutathione S-transferase 1, isoform D OS=Anophele... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835514 ID=CF835514; Name=CF835514; organism=Citrus sinensis; type=EST; length=730bp
TTTTGTGCTTGGTTGAGAAGGAAATCGAATTTGAAACTGTCCCCGTTGAT
CTCATCAAAGGAGAGCAGAGAAGTCCTGAGTACCTCAAATTACAGCCTTT
TGGAGAGCTTCCTGTCATTCAAGATGGAGATTTTATTTTATACGAGTCGC
GAGCTATCATGAGGTACTACGCTGAAAAGTACAGGTCTCAAGGAACCGAA
CTTCTGGGTAAAACAATTGAAGAAAGAGGCCTGGTGGAACAGTGGCTAGA
AGTAGAGGCACACAACTACAACCCAGCAATTTACGAGCTGACCATCCAAC
TTTTATTTTCCTCCAAGTTTGGACGTCCCGTTGATGAAAAATTGGTGAAG
GAGAGTGACGAAAAGCTTGGAAAAACGCTCGACGTTTACGAGGAGAGGCT
GTCGAAGAGCAAGTATTTGGCTGGTGATTTCTTCAGCCTGGCTGATCTGA
GTCACATTCCATTTACCCACTACTTGGTTGGGCCGATGGGGAGACAGCAT
ATGATTAGAGACAGGAAGCATGTGAGTGCCTGGTGGGATGATATTAGCAA
CAGGCCGTCCTGGAAGAAAGTCCTTGAGCTCTGTAAGACTCCTTTCGGCT
GAGCTTGATTGTATGTGTTTCAATTTTCGGGCTTGTGTTTTACTTCTCTA
CTACTTGGNTTGTTTCTGTCTGTGGGATATGTTTCTTGCATATGTGTGTT
TCAAATAAATAAATGTTTGGAGTTGGAGCT
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