CF835524

Overview
NameCF835524
Unique NameCF835524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_BORSA (Protein transport protein Sec61 subunit alpha OS=Boreogadus saida GN=sec61a PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.408e-59
Identity = 114/173 (65.90%), Postives = 138/173 (79.77%), Query Frame = -2 
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL Y+++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSTRFSGNFIVNLLGTWSDTSTGGPARAYPVGGLCYFLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
[Close]
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.408e-59
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = -2 
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: S61A1_PONAB (Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.408e-59
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = -2 
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: S61A1_MOUSE (Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.408e-59
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = -2 
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: S61A1_HUMAN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo sapiens GN=SEC61A1 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.408e-59
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = -2 
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.408e-59
Identity = 115/173 (66.47%), Postives = 139/173 (80.35%), Query Frame = -2 
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: S61A2_ONCMY (Protein transport protein Sec61 subunit alpha isoform B OS=Oncorhynchus mykiss GN=sec61ab PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 2.401e-59
Identity = 114/173 (65.90%), Postives = 136/173 (78.61%), Query Frame = -2 
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY + P S   +  +P HA  Y+ FML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPVGGLCYYFSPPESFGSVLDDPIHAAIYICFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
[Close]
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_PAGBO (Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.136e-59
Identity = 114/173 (65.90%), Postives = 137/173 (79.19%), Query Frame = -2 
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
[Close]
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_NOTAN (Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.136e-59
Identity = 114/173 (65.90%), Postives = 137/173 (79.19%), Query Frame = -2 
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
[Close]
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_HARAN (Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.136e-59
Identity = 114/173 (65.90%), Postives = 137/173 (79.19%), Query Frame = -2 
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
The following BLAST results are available for this feature:
BLAST of CF835524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_BORSA1.408e-5965.90Protein transport protein Sec61 subunit alpha OS=B... [more]
S61A1_RAT1.408e-5966.47Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_PONAB1.408e-5966.47Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_MOUSE1.408e-5966.47Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_HUMAN1.408e-5966.47Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_BOVIN1.408e-5966.47Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_ONCMY2.401e-5965.90Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_PAGBO3.136e-5965.90Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NOTAN3.136e-5965.90Protein transport protein Sec61 subunit alpha OS=N... [more]
SC61A_HARAN3.136e-5965.90Protein transport protein Sec61 subunit alpha OS=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835524 ID=CF835524; Name=CF835524; organism=Citrus sinensis; type=EST; length=740bp
TTTCAACAGAAACTCTTTCTATCTTCCTTGGCGTGTTGAACGTACAGAAA
CTTTCAAAAGAAAAAAGAAAGGCGGCTAAGCATTGGCCAAACTACAGACT
GATCTGAATCTCTATTCATAGGTGTTAACAAGGTATGGCCTATGTTAAGT
CTTTGAATTCTGCAACAATATTGCACAATACTACTCACCAACTAATCTGA
AACTCAAGATCATTGGTGTATTAAAAGCCAAAGAAGCCAAGTTCACTAGC
TCTCTCCTTCTCAAACGTCTCAAAGTACTGATATATGATCGTAACTGCGA
GCAATATCCCAGTTCCTGACCCAATTGCTCCCATGAAATCAGCCAGGACT
GTTAATGCACCAATGCACACTCCGCCAAAGGCAGCAGCAGTTGGTATGTA
CCGGTTCAGTTCCTTTTGAAGATTTGAGTCTCTATGTCCAGGCATCACCA
TTTGTTGCTCCTTAAGCTGCTTGGCCACATCCCGGGCAGAAGACCCTGAA
ACTTCAATCCAAGTTTTCGAGAAAAGAGCACAAGCAGTAAGCATAAAAAC
CAGGTAGAACAGAGCATGGAAAGGATTGGCTGCCATATCAGCCAAGCTTG
CTGGTGCAGTGACATAATAAGCTAGGCCACCAACTGGAATAGAGTGGCCA
GAATATTCAGATTCCTTCCACTTCCCTAACAGATTAACAAAGAAATTGCC
ACTGTACTTCCTGTAGAGCAACTGAGAGATGAAATACAGA
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