CF835524

Overview
NameCF835524
Unique NameCF835524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_DISMA (Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 3.136e-59
Identity = 114/173 (65.90%), Postives = 137/173 (79.19%), Query Frame = -2
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: S61A1_CANFA (Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis familiaris GN=SEC61A1 PE=1 SV=3)

HSP 1 Score: 227.639 bits (579), Expect = 5.349e-59
Identity = 114/173 (65.90%), Postives = 139/173 (80.35%), Query Frame = -2
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL +Y++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_HEMAM (Protein transport protein Sec61 subunit alpha OS=Hemitripterus americanus GN=sec61a PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 9.124e-59
Identity = 114/173 (65.90%), Postives = 137/173 (79.19%), Query Frame = -2
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  301 LYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAGIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_HALRO (Protein transport protein Sec61 subunit alpha OS=Halocynthia roretzi PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.457e-56
Identity = 114/173 (65.90%), Postives = 135/173 (78.03%), Query Frame = -2
Query:  227 LYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 739
            LY ISQ+L  ++ GNFF+ LLG W++ E  G   S PV  L YY++ P S   M  +P H L Y+ FML +CA FSKTWIEVSGS+A+DVAKQLKEQQMVM GHR+ ++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  301 LYVISQMLAIRFRGNFFIGLLGVWEDVEGGGPARSYPVA-LCYYLSPPESFFSMFLDPIHGLLYITFMLGSCAFFSKTWIEVSGSAAKDVAKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVLADFIGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 471          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_PYRSA (Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.245e-56
Identity = 103/160 (64.38%), Postives = 135/160 (84.38%), Query Frame = -2
Query:  266 LYFISQLLYRKYSGNFFVNLLGKWKESEYS--GHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFET 739
            LYFISQ+LY++Y  N  +++LG+W+E E S  G   PVGG+AYY++   S A++ ++P HAL Y++F+L +CALFSKTWI+VSG+SA DV+KQL++QQMVM G R S++Q+ELNRYIPTAAAFGG+CIGAL+++ADFMGAIGSGTGILLAVT IYQ +ET
Sbjct:  306 LYFISQILYKRYPENIIIHILGRWEEPEMSVSGQMRPVGGIAYYISPLNSFAEIVSDPVHALLYIIFILASCALFSKTWIQVSGTSASDVSKQLRDQQMVMKGFRASSMQRELNRYIPTAAAFGGMCIGALSIVADFMGAIGSGTGILLAVTTIYQSWET 465          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_NEUCR (Protein transport protein SEC61 subunit alpha OS=Neurospora crassa GN=sec-61 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.011e-49
Identity = 95/162 (58.64%), Postives = 117/162 (72.22%), Query Frame = -2
Query:  254 LYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 739
            ++ ISQ+LY ++S N  V L G W+  E +     V GL YY++ P +  D   +P H   Y+ +MLTACA+FSKTWIEVSGSS RDVAKQLK+Q +VM GHR+ ++ KEL R IPTAAAFGG CIGAL+V +D MGA+GSGTG LLAVTIIY YFE   KE
Sbjct:  303 VFLISQMLYSRFSENLLVRLFGVWEAKEGTAQLSAVSGLVYYMSPPLNFKDALLDPIHTAVYIAYMLTACAVFSKTWIEVSGSSPRDVAKQLKDQGLVMAGHREQSMYKELKRIIPTAAAFGGACIGALSVASDLMGALGSGTGTLLAVTIIYGYFEIAAKE 464          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_SCHPO (Protein transport protein sec61 subunit alpha OS=Schizosaccharomyces pombe GN=sec61 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.151e-43
Identity = 85/162 (52.47%), Postives = 111/162 (68.52%), Query Frame = -2
Query:  254 LYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 739
            L+F S+LL+ ++S NF V  LG W+++  SG       L+YY++ PAS  D   +P H L Y+ F + ACALFSK WIEVSG+S RDVAKQLK QQ+VM GHR+ ++ KEL R IPTAA   G  +GAL V +D +GA+GSGT +LL  T IY Y+E  +KE
Sbjct:  310 LFFASRLLFNRFSSNFLVRFLGVWEQTATSG-------LSYYLSPPASFQDALIDPIHTLVYVFFTMFACALFSKLWIEVSGASPRDVAKQLKSQQLVMAGHREGSMYKELKRIIPTAAWLSGAVVGALAVASDLLGALGSGTAVLLCTTTIYGYYEQLQKE 464          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_DEBHA (Protein transport protein SEC61 subunit alpha OS=Debaryomyces hansenii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.019e-43
Identity = 81/162 (50.00%), Postives = 111/162 (68.52%), Query Frame = -2
Query:  254 LYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 739
            ++ ISQ+L+ ++  N FV +LG W   + +     V GLAYY+  P S  +   +P   + Y++F+L +CA+FS TWIE+SG+S RDVAKQ KEQ +V+ GHRD++  +EL + IPTAAAFGG  IGAL+V  D MG +GSGT ILL+VT IY Y+E   KE
Sbjct:  303 IFIISQMLFVRWPNNIFVKILGSWDTRQGAAQLYAVSGLAYYIQPPLSFTEALLDPIKTIIYIIFVLGSCAVFSTTWIEISGASPRDVAKQFKEQGLVIAGHRDTSAYRELKKIIPTAAAFGGATIGALSVFCDLMGTLGSGTSILLSVTTIYGYYELAMKE 464          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_YARLI (Protein transport protein SEC61 subunit alpha OS=Yarrowia lipolytica GN=SEC61 PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.042e-42
Identity = 84/162 (51.85%), Postives = 111/162 (68.52%), Query Frame = -2
Query:  254 LYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 739
            ++ ISQ+L++K+  N  V LLG W   E      PV G+AYY+  P +  +  A+P   + Y+ F+L  CA+FS TWIE+SGSS RDVAKQ KEQ +V+ G R+++  KEL R IPTAAAFGG  IGAL+V +D +GA+ SGTGIL+AVT IY Y+E   KE
Sbjct:  303 IFIISQMLFKKFPTNVLVRLLGVWDGREGMQQLFPVSGIAYYMQPPFNAKEALADPVKTVIYIAFVLGVCAVFSATWIEISGSSPRDVAKQFKEQGLVIAGRRETSAYKELKRIIPTAAAFGGATIGALSVASDLLGALSSGTGILMAVTTIYGYYEMAAKE 464          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_CANAL (Protein transport protein SEC61 subunit alpha OS=Candida albicans GN=SEC61 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.013e-41
Identity = 84/162 (51.85%), Postives = 107/162 (66.05%), Query Frame = -2
Query:  254 LYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 739
            ++ ISQLL+ ++  N FV LLG W     S      GGLAYY+  P +  D   +P     Y+ F+L +CA+FS TWIE+SG+S RDVAKQ KEQ +V+ GHRD++  KEL + I  AAAFGG  IGAL+V+ D MG +GSGT ILLAVT IY Y+E   KE
Sbjct:  303 IFIISQLLFMRWPNNLFVKLLGTWDARAGSSQLYANGGLAYYIQPPFNFTDALLDPIKTTIYIAFVLGSCAVFSTTWIEISGTSPRDVAKQFKEQGLVIAGHRDTSAYKELKKIIHIAAAFGGATIGALSVVCDLMGTLGSGTSILLAVTTIYGYYELAVKE 464          
The following BLAST results are available for this feature:
BLAST of CF835524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_DISMA3.136e-5965.90Protein transport protein Sec61 subunit alpha OS=D... [more]
S61A1_CANFA5.349e-5965.90Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_HEMAM9.124e-5965.90Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_HALRO1.457e-5665.90Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_PYRSA3.245e-5664.38Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NEUCR1.011e-4958.64Protein transport protein SEC61 subunit alpha OS=N... [more]
SC61A_SCHPO3.151e-4352.47Protein transport protein sec61 subunit alpha OS=S... [more]
SC61A_DEBHA7.019e-4350.00Protein transport protein SEC61 subunit alpha OS=D... [more]
SC61A_YARLI2.042e-4251.85Protein transport protein SEC61 subunit alpha OS=Y... [more]
SC61A_CANAL1.013e-4151.85Protein transport protein SEC61 subunit alpha OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835524 ID=CF835524; Name=CF835524; organism=Citrus sinensis; type=EST; length=740bp
TTTCAACAGAAACTCTTTCTATCTTCCTTGGCGTGTTGAACGTACAGAAA
CTTTCAAAAGAAAAAAGAAAGGCGGCTAAGCATTGGCCAAACTACAGACT
GATCTGAATCTCTATTCATAGGTGTTAACAAGGTATGGCCTATGTTAAGT
CTTTGAATTCTGCAACAATATTGCACAATACTACTCACCAACTAATCTGA
AACTCAAGATCATTGGTGTATTAAAAGCCAAAGAAGCCAAGTTCACTAGC
TCTCTCCTTCTCAAACGTCTCAAAGTACTGATATATGATCGTAACTGCGA
GCAATATCCCAGTTCCTGACCCAATTGCTCCCATGAAATCAGCCAGGACT
GTTAATGCACCAATGCACACTCCGCCAAAGGCAGCAGCAGTTGGTATGTA
CCGGTTCAGTTCCTTTTGAAGATTTGAGTCTCTATGTCCAGGCATCACCA
TTTGTTGCTCCTTAAGCTGCTTGGCCACATCCCGGGCAGAAGACCCTGAA
ACTTCAATCCAAGTTTTCGAGAAAAGAGCACAAGCAGTAAGCATAAAAAC
CAGGTAGAACAGAGCATGGAAAGGATTGGCTGCCATATCAGCCAAGCTTG
CTGGTGCAGTGACATAATAAGCTAGGCCACCAACTGGAATAGAGTGGCCA
GAATATTCAGATTCCTTCCACTTCCCTAACAGATTAACAAAGAAATTGCC
ACTGTACTTCCTGTAGAGCAACTGAGAGATGAAATACAGA
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