CF835524

Overview
NameCF835524
Unique NameCF835524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_KLULA (Protein transport protein SEC61 subunit alpha OS=Kluyveromyces lactis GN=SEC61 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.851e-41
Identity = 82/164 (50.00%), Postives = 114/164 (69.51%), Query Frame = -2
Query:  254 LYFISQLLYRKYSGNFFVNLLGKW--KESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 739
            ++ ISQ+LY+++S N  V LLG W  +    +G  + + GL+YY+  P S+ D   +P   + Y+ F+L ACALFSKTWIE+SG+S RDVAKQ K+Q + + G R++N+ KEL + IPTAAAFGG  IGAL+V +D +G +GSGT IL+A T IY Y+E   KE
Sbjct:  302 IFLISQILYQRFSTNPLVKLLGVWGTRAGAPAGQQVALSGLSYYIQPPFSVTDALLDPIKTVVYVGFVLGACALFSKTWIEISGTSPRDVAKQFKDQGLTINGKRETNVYKELKKIIPTAAAFGGAVIGALSVGSDLLGTLGSGTSILMATTTIYGYYEVAAKE 465          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_HANAN (Protein transport protein SEC61 subunit alpha OS=Hansenula anomala GN=SEC61 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.911e-40
Identity = 81/161 (50.31%), Postives = 108/161 (67.08%), Query Frame = -2
Query:  254 YFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 736
            + ISQ+L++++  N  V L G W     S       GLAYY+  P SL +   +P   + Y+ F+L+ CALFSKTWIE+SG++ RDVAKQ K+Q +V+ G R++++ KEL R IPTAAAFGG  IGAL+V  D +G +GSGT ILLAVT IY Y+E   KE
Sbjct:  304 FIISQMLFQRFPLNPVVRLFGVWDARPGSAQLFASNGLAYYIQPPLSLTEALLDPIKTVIYVSFVLSVCALFSKTWIEISGTAPRDVAKQFKDQGLVIAGRRETSVYKELKRIIPTAAAFGGASIGALSVACDLLGTLGSGTSILLAVTTIYSYYEIAAKE 464          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_CANGA (Protein transport protein SEC61 subunit alpha OS=Candida glabrata GN=SEC61 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.760e-39
Identity = 81/163 (49.69%), Postives = 110/163 (67.48%), Query Frame = -2
Query:  254 LYFISQLLYRKYSGNFFVNLLGKWK-ESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 739
            ++ ISQ+L++KY  N  + L G W      +G  +P+ G++YY+    SL     +P   + Y  F+L  CALFSKTWIE+SG+SA+DVAKQ KEQ MV+ G R++++ KEL + IPTAAAFGG  IGAL+V +D +GA+GSG  ILLA T IY Y+E   KE
Sbjct:  302 IFLISQILFQKYPSNPVIRLFGVWGIRPGTNGPQVPLSGISYYLQPIGSLKMALLDPIKTVIYTAFVLGTCALFSKTWIEISGTSAKDVAKQFKEQGMVINGKRETSVYKELKKIIPTAAAFGGATIGALSVGSDLLGALGSGASILLATTTIYGYYEVAAKE 464          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_ASHGO (Protein transport protein SEC61 subunit alpha OS=Ashbya gossypii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.605e-39
Identity = 79/165 (47.88%), Postives = 115/165 (69.70%), Query Frame = -2
Query:  254 LYFISQLLYRKYSGNFFVNLLGKW---KESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 739
            ++  SQLLY+K+  N  V +LG W    ++ YS ++  + GL+YY+  P S  +   +P   + Y+ F+L ACA+FS+TWI+VSG+S RDV+KQ KEQ +V+ G R++++ +EL + IPTAAAFGG  IGAL+V +D +G +GSGT IL+A T IY Y+ET  KE
Sbjct:  302 IFLTSQLLYQKFPNNPIVKMLGVWGTRSDAPYSPNAA-ISGLSYYIQPPFSFTEALLDPIKTVVYVTFVLGACAMFSRTWIDVSGTSPRDVSKQFKEQGLVINGRRETSVYRELKKVIPTAAAFGGATIGALSVGSDLLGTLGSGTSILMATTTIYGYYETAAKE 465          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SC61A_YEAST (Protein transport protein SEC61 OS=Saccharomyces cerevisiae GN=SEC61 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.985e-38
Identity = 76/163 (46.63%), Postives = 111/163 (68.10%), Query Frame = -2
Query:  254 LYFISQLLYRKYSGNFFVNLLGKWK-ESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKE 739
            ++ ISQ+L++KY  N  + L+G W       G  + + GLAYY+    SL++   +P   + Y+ F+L +CA+FSKTWIE+SG+S RD+AKQ K+Q MV+ G R++++ +EL + IPTAAAFGG  IGAL+V +D +G +GSG  IL+A T IY Y+E   KE
Sbjct:  303 IFLISQILFQKYPTNPLIRLIGVWGIRPGTQGPQMALSGLAYYIQPLMSLSEALLDPIKTIVYITFVLGSCAVFSKTWIEISGTSPRDIAKQFKDQGMVINGKRETSIYRELKKIIPTAAAFGGATIGALSVGSDLLGTLGSGASILMATTTIYGYYEAAAKE 465          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_METVA (Preprotein translocase subunit secY OS=Methanococcus vannielii GN=secY PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.620e-25
Identity = 57/153 (37.25%), Postives = 91/153 (59.48%), Query Frame = -2
Query:  239 FVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 691
            F++ +G     +YS +   V G+AYY + P  ++++ ++P HA+FY + M+  C LF   W+E SG  A+ +AK+L    M + G R S  ++++ L RYI      G   +G L   ADF GA+G GTG+LL V+I+Y+ +E   +E+ SEL
Sbjct:  276 FLDRMGYPILGQYS-NGTAVSGIAYYFSTPYGISNIISDPLHAIFYTLMMVIFCILFGLFWVETSGLDAKSMAKKLGNLDMAIKGFRKSQKSIEQRLKRYIKPITVMGSAFVGFLAAAADFTGALGGGTGVLLTVSIVYRLYEQLVQEQLSEL 427          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_METTH (Preprotein translocase subunit secY OS=Methanobacterium thermoautotrophicum GN=secY PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.920e-24
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = -2
Query:  239 VGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 634
            V GLAY +TAP S+  +  +PF  +FY V  +  C LF+  W+E+S    R VA+QL +  M +PG R S    +K L RYIPT    GG  +G L  +AD  G++G GTG+LL V I+Y+ +E   +E+  ++
Sbjct:  313 VDGLAYLLTAPRSIDALILDPFRVVFYAVVFIGLCVLFAWLWVEISNIGPRHVARQLYQMGMQIPGFRSSRGQFEKILKRYIPTITILGGAFVGLLAFVADLTGSLGGGTGVLLTVGIVYRLYEEIAQEQLMDM 446          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_PYRAB (Preprotein translocase subunit secY OS=Pyrococcus abyssi GN=secY PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.275e-24
Identity = 53/135 (39.26%), Postives = 84/135 (62.22%), Query Frame = -2
Query:  239 PVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 637
            PVGG   YV  P S+  +  NP  AL YL+  + +  +F   W+E++G  AR +A+QL+   + +PG R     L++ L +YIP    +G + +  + VLADF+GA+G+GTGILL V I+Y+++E   +E+ SE+
Sbjct:  324 PVGGFVLYVIPPRSIFTVIDNPVRALVYLILTVISSLIFGFLWVELTGLDARTIARQLQRAGLQIPGFRRDPRTLERVLQKYIPYVTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQISEM 458          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_PYRHO (Preprotein translocase subunit secY OS=Pyrococcus horikoshii GN=secY PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23
Identity = 50/135 (37.04%), Postives = 84/135 (62.22%), Query Frame = -2
Query:  239 PVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 637
            P+GG   YV  P ++  +  NP  A+ YL+  +    LF   W+E++G  AR +A+QL+   + +PG R     L++ L +YIP    +G + +  ++VLADF+GA+G+GTGILL V I+Y+++E   +E+ +E+
Sbjct:  324 PIGGFVLYVIPPRNIFTVIDNPVRAIIYLILTIIFSLLFGFLWVELTGLDARTIARQLQRAGLQIPGFRRDPRTLERVLQKYIPYVTFWGSLTVALISVLADFLGALGTGTGILLTVGILYRFYEEIAREQITEM 458          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_PYRFU (Preprotein translocase subunit secY OS=Pyrococcus furiosus GN=secY PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23
Identity = 51/135 (37.78%), Postives = 82/135 (60.74%), Query Frame = -2
Query:  239 PVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDS--NLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 637
            P+ G   YV  P ++  +  NP  A+ YL+  +    LF   W+E++G  AR +A+QL+   + +PG R     L+K L RYIP    +G + +  + VLADF+GA+G+GTGILL V I+Y+++E   +E+ +E+
Sbjct:  324 PISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLEKVLQRYIPYVTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITEM 458          
The following BLAST results are available for this feature:
BLAST of CF835524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_KLULA3.851e-4150.00Protein transport protein SEC61 subunit alpha OS=K... [more]
SC61A_HANAN1.911e-4050.31Protein transport protein SEC61 subunit alpha OS=H... [more]
SC61A_CANGA2.760e-3949.69Protein transport protein SEC61 subunit alpha OS=C... [more]
SC61A_ASHGO3.605e-3947.88Protein transport protein SEC61 subunit alpha OS=A... [more]
SC61A_YEAST3.985e-3846.63Protein transport protein SEC61 OS=Saccharomyces c... [more]
SECY_METVA8.620e-2537.25Preprotein translocase subunit secY OS=Methanococc... [more]
SECY_METTH1.920e-2441.04Preprotein translocase subunit secY OS=Methanobact... [more]
SECY_PYRAB3.275e-2439.26Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_PYRHO2.123e-2337.04Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_PYRFU2.123e-2337.78Preprotein translocase subunit secY OS=Pyrococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835524 ID=CF835524; Name=CF835524; organism=Citrus sinensis; type=EST; length=740bp
TTTCAACAGAAACTCTTTCTATCTTCCTTGGCGTGTTGAACGTACAGAAA
CTTTCAAAAGAAAAAAGAAAGGCGGCTAAGCATTGGCCAAACTACAGACT
GATCTGAATCTCTATTCATAGGTGTTAACAAGGTATGGCCTATGTTAAGT
CTTTGAATTCTGCAACAATATTGCACAATACTACTCACCAACTAATCTGA
AACTCAAGATCATTGGTGTATTAAAAGCCAAAGAAGCCAAGTTCACTAGC
TCTCTCCTTCTCAAACGTCTCAAAGTACTGATATATGATCGTAACTGCGA
GCAATATCCCAGTTCCTGACCCAATTGCTCCCATGAAATCAGCCAGGACT
GTTAATGCACCAATGCACACTCCGCCAAAGGCAGCAGCAGTTGGTATGTA
CCGGTTCAGTTCCTTTTGAAGATTTGAGTCTCTATGTCCAGGCATCACCA
TTTGTTGCTCCTTAAGCTGCTTGGCCACATCCCGGGCAGAAGACCCTGAA
ACTTCAATCCAAGTTTTCGAGAAAAGAGCACAAGCAGTAAGCATAAAAAC
CAGGTAGAACAGAGCATGGAAAGGATTGGCTGCCATATCAGCCAAGCTTG
CTGGTGCAGTGACATAATAAGCTAGGCCACCAACTGGAATAGAGTGGCCA
GAATATTCAGATTCCTTCCACTTCCCTAACAGATTAACAAAGAAATTGCC
ACTGTACTTCCTGTAGAGCAACTGAGAGATGAAATACAGA
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