CF835524

Overview
NameCF835524
Unique NameCF835524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_METJA (Preprotein translocase subunit secY OS=Methanocaldococcus jannaschii GN=secY PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23
Identity = 48/134 (35.82%), Postives = 81/134 (60.45%), Query Frame = -2
Query:  239 VGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 634
            V G+AYY++ P  L+ + ++P HA+ Y++ M+  C +F   W+E +G   + +AK++    M + G R S   ++  L RYIP         +G L  +A+F+GA+G GTG+LL V+I+Y+ +E   +E+ SEL
Sbjct:  293 VDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLREKVSEL 426          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_ARCFU (Preprotein translocase subunit secY OS=Archaeoglobus fulgidus GN=secY PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 47/114 (41.23%), Postives = 71/114 (62.28%), Query Frame = -2
Query:  239 HALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG--SGTGILLAVTIIYQYFETFEKERASEL 568
            H L   + ++    +F+  W+E SG  AR VA Q+ +  M +PG R S   L++ L+RYIP     GG  IG LT++A+ +G IG  SGTG+LLAV+I Y+++E   KE+ +E+
Sbjct:  368 HLLIDALILVVGGIIFAWFWVETSGMDARTVASQIAKSGMQVPGFRKSPQVLERVLSRYIPKVTILGGAIIGILTLVANMLGTIGNVSGTGLLLAVSIAYRFYEDLAKEQLTEM 481          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_HALVO (Preprotein translocase subunit secY OS=Halobacterium volcanii GN=secY PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.925e-16
Identity = 49/145 (33.79%), Postives = 80/145 (55.17%), Query Frame = -2
Query:  239 GGLAYYVTAPASLADM-------AANPF----HALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG-SGTGILLAVTIIYQYFETFEKERASEL 631
            GGL YY+    S +D        +A+P       L  L+FM+   A+F+  W+E +G   +  A+Q++   M +PG R +   +++ + RYIP     GG  +G L V+A+ +G IG SGTG+LL V+I Y+ +E   +E+  E+
Sbjct:  333 GGLLYYLAPIQSRSDWMWFLGLTSADPLDIAIRVLIDLIFMIVGGAVFAIFWVETTGMGPKSTAQQIQNSGMQIPGFRRNPQVIERVMERYIPQVTVIGGALVGLLAVMANMLGTIGASGTGLLLTVSITYKLYEEIAEEQLMEM 477          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_AERPE (Preprotein translocase subunit secY OS=Aeropyrum pernix GN=secY PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15
Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = -2
Query:  242 LAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 625
            + YY++ P  +    A+P     ++        +F   W+E++G + R+ A++L +  + +PG R     L++ L RYI        + + AL ++AD  GA G+GTG+LLAV II QY+    +ERA E
Sbjct:  314 IVYYLSPPRGVVQSIADPVKTAVFIASWTVLSIVFGYMWVEIAGLNPREQAERLIKGGLAIPGMRSDPRVLERVLRRYIYPLTFLSSLIVAALVIVADIFGAYGTGTGLLLAVGIINQYYAMITRERALE 443          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: YGMH_SCHPO (Uncharacterized protein C19G7.17 OS=Schizosaccharomyces pombe GN=SPBC19G7.17 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 46/159 (28.93%), Postives = 79/159 (49.69%), Query Frame = -2
Query:  269 LYFISQLLYRKYSGNFFVNLLGKWKESE-YSGHSIP-VGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFE 739
            L   +  LY     +    LL ++   + ++ H +  VGGL Y++  P  L++   +P H + Y + ++     FS  W+  +    RDV    KE Q+V+ G+R++ + KEL + IP AA      +  L+V+A    A   G G+L+A  ++Y  FE
Sbjct:  305 LLVFAYALYSLCPNSLITRLLVQYSPIDTFAEHKLQLVGGLVYFLYPPLGLSEALLHPVHTVIYTITLICITIYFSLLWMNATAGGPRDVLLFFKENQLVIAGYREATMLKELEKIIPIAAKLSAFFVSILSVIAGIF-ASTFGVGVLIASALVYASFE 462          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_HALMA (Preprotein translocase subunit secY OS=Haloarcula marismortui GN=secY PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.353e-14
Identity = 50/148 (33.78%), Postives = 73/148 (49.32%), Query Frame = -2
Query:  239 PVGGLAYYVTAPASLADM------AANPFHALFY-----LVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG--SGTGILLAVTIIYQYFETFEKERASEL 637
            P GGL Y++    S  D        A P   +       L  ML   A+F+  W+E +       AKQ+    M +PG R +   ++K L RYIP     GG  +G L V+A+ +G IG  SGTG+LL V+I Y+ +E   +E+  E+
Sbjct:  331 PTGGLFYFLAPIQSRGDWMWWLEGTAQPVWQILTRVGIDLFVMLVGGAVFAVFWVETTDMGPEATAKQIHNSGMQIPGFRQNVGVIEKVLERYIPQVTVIGGALVGLLAVMANMLGTIGGVSGTGLLLTVSITYKLYEEIAEEQLMEM 478          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_SULSO (Preprotein translocase subunit secY OS=Sulfolobus solfataricus GN=secY PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = -2
Query:  239 PASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 604
            P S+  +  +P  AL Y V  +    LF   W++V+G      A+QL E  + +PG R++   ++  L RYI   A F  + +G + V A  +GA G+G GILLAVTI  QY+     ER+ E+
Sbjct:  336 PHSIYAVVLDPLGALEYAVVFIVLSILFGILWVDVAGLDPATQAQQLVEAGIEIPGVRNNPKIIEGILARYIYPLAFFSSIIVGLIAVFATLLGAYGTGIGILLAVTIAIQYYSLLAYERSLEM 459          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_HALSA (Preprotein translocase subunit secY OS=Halobacterium salinarium GN=secY PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 47/154 (30.52%), Postives = 77/154 (50.00%), Query Frame = -2
Query:  239 YSGHSIPVGGLAYYVTAPAS-------LADMAANPFHALFYLV----FMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIG--SGTGILLAVTIIYQYFETFEKERASEL 655
            Y G+    GGL YY+    S        +   A  +  L  +     FM+   A+F+  W+E +       A+Q++   M +PG R +   ++K + RYIP     GG  +G L V+A+ +G IG  SGTG+LL ++I Y+ +E   +E+  E+
Sbjct:  326 YGGNGQVTGGLFYYLAPIYSPNAWMWWTSGATAARWQVLIRIAIDLSFMIIGGAIFAIFWVETADMGPDATARQIQNSGMQIPGFRKNQGVIEKVMERYIPQVTVIGGALVGLLAVMANMLGTIGNVSGTGLLLTISITYKLYEEIAEEQMMEM 479          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SSH1_YEAST (Sec sixty-one protein homolog OS=Saccharomyces cerevisiae GN=SSH1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 41/148 (27.70%), Postives = 75/148 (50.68%), Query Frame = -2
Query:  293 YFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAV 736
            + + QL+ +    +    ++G + E+  +  ++P   L+      +    +   P   + Y  F+L     F+  W  +SGSSARDVA + K+Q + + G R+ N+ KELN+ IP AA  G   +  +TV+ + +G  G   GI++ +
Sbjct:  311 FVLIQLVAKNEPTHIICKIMGHY-ENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQNVAKELNKVIPIAAVTGASVLSLITVIGESLGLKGKAAGIVVGI 457          
BLAST of CF835524 vs. ExPASy Swiss-Prot
Match: SECY_SULAC (Preprotein translocase subunit secY OS=Sulfolobus acidocaldarius GN=secY PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 37/124 (29.84%), Postives = 64/124 (51.61%), Query Frame = -2
Query:  239 PASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN--LQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 604
            P S+  +  +P  A  Y    +    +F   WI+V+G   +  A+Q+    + +PG R +   ++  L++YI     F  + +G + V+A F+G  G+G G+LLA+TI  QY+     ER  E+
Sbjct:  330 PHSVYALVVDPVGAAIYAAVFIVLSIVFGMLWIDVAGLDPKTQAEQMIRSGIEIPGMRTNPRIIEGILSKYIYALGFFSSLIVGLIAVVATFLGTYGTGVGLLLAITIAMQYYNLLAYERTLEM 453          
The following BLAST results are available for this feature:
BLAST of CF835524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SECY_METJA3.621e-2335.82Preprotein translocase subunit secY OS=Methanocald... [more]
SECY_ARCFU2.274e-1741.23Preprotein translocase subunit secY OS=Archaeoglob... [more]
SECY_HALVO1.925e-1633.79Preprotein translocase subunit secY OS=Halobacteri... [more]
SECY_AERPE2.779e-1532.31Preprotein translocase subunit secY OS=Aeropyrum p... [more]
YGMH_SCHPO4.741e-1528.93Uncharacterized protein C19G7.17 OS=Schizosaccharo... [more]
SECY_HALMA2.353e-1433.78Preprotein translocase subunit secY OS=Haloarcula ... [more]
SECY_SULSO6.846e-1436.29Preprotein translocase subunit secY OS=Sulfolobus ... [more]
SECY_HALSA8.941e-1430.52Preprotein translocase subunit secY OS=Halobacteri... [more]
SSH1_YEAST3.397e-1327.70Sec sixty-one protein homolog OS=Saccharomyces cer... [more]
SECY_SULAC4.906e-1229.84Preprotein translocase subunit secY OS=Sulfolobus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01G11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835524 ID=CF835524; Name=CF835524; organism=Citrus sinensis; type=EST; length=740bp
TTTCAACAGAAACTCTTTCTATCTTCCTTGGCGTGTTGAACGTACAGAAA
CTTTCAAAAGAAAAAAGAAAGGCGGCTAAGCATTGGCCAAACTACAGACT
GATCTGAATCTCTATTCATAGGTGTTAACAAGGTATGGCCTATGTTAAGT
CTTTGAATTCTGCAACAATATTGCACAATACTACTCACCAACTAATCTGA
AACTCAAGATCATTGGTGTATTAAAAGCCAAAGAAGCCAAGTTCACTAGC
TCTCTCCTTCTCAAACGTCTCAAAGTACTGATATATGATCGTAACTGCGA
GCAATATCCCAGTTCCTGACCCAATTGCTCCCATGAAATCAGCCAGGACT
GTTAATGCACCAATGCACACTCCGCCAAAGGCAGCAGCAGTTGGTATGTA
CCGGTTCAGTTCCTTTTGAAGATTTGAGTCTCTATGTCCAGGCATCACCA
TTTGTTGCTCCTTAAGCTGCTTGGCCACATCCCGGGCAGAAGACCCTGAA
ACTTCAATCCAAGTTTTCGAGAAAAGAGCACAAGCAGTAAGCATAAAAAC
CAGGTAGAACAGAGCATGGAAAGGATTGGCTGCCATATCAGCCAAGCTTG
CTGGTGCAGTGACATAATAAGCTAGGCCACCAACTGGAATAGAGTGGCCA
GAATATTCAGATTCCTTCCACTTCCCTAACAGATTAACAAAGAAATTGCC
ACTGTACTTCCTGTAGAGCAACTGAGAGATGAAATACAGA
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